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    Subcutaneous insulin administration by deep reinforcement learning for blood glucose level control of type-2 diabetic patients

    , Article Computers in Biology and Medicine ; Volume 148 , 2022 ; 00104825 (ISSN) Raheb, M. A ; Niazmand, V. R ; Eqra, N ; Vatankhah, R ; Sharif University of Technology
    Elsevier Ltd  2022
    Abstract
    Background: Type-2 diabetes mellitus is characterized by insulin resistance and impaired insulin secretion in the human body. Many endeavors have been made in terms of controlling and reducing blood glucose via the medium of automated controlling tools to increase precision and efficiency and reduce human error. Recently, reinforcement learning algorithms are proved to be powerful in the field of intelligent control, which was the motivation for the current study. Methods: For the first time, a reinforcement algorithm called normalized advantage function (NAF) algorithm has been applied as a model-free reinforcement learning method to regulate the blood glucose level of type-2 diabetic... 

    Expression analysis of Wnt signaling pathway related lncRNAs in periodontitis: A pilot case-control study

    , Article Human Gene ; Volume 33 , 2022 ; 27730441 (ISSN) Ghafouri-Fard, S ; Dashti, S ; Gholami, L ; Badrlou, E ; Sadeghpour, S ; Hussen, B. M ; Hidayat, H. J ; Nazer, N ; Shadnoush, M ; Sayad, A ; Arefian, N ; Sharif University of Technology
    Elsevier B.V  2022
    Abstract
    LncRNAs are involved in the modulation of several signaling pathways which have a crucial effect in the differentiation of periodontal ligament cells and the induction of cementum regeneration. Autophagy and Wnt signaling are two important pathways with a wide range of interrelationships associated with periodontitis. We chose four lncRNAs based on their potential interaction with these two pathways. We examined the expression of FOXD2-AS1, NNT-AS1, GAS8-AS1, and CCAT1 lncRNAs in tissues and blood specimens of patients with periodontitis and unaffected controls using qRT-PCR. Expression amounts of FOXD2-AS1 were lower in blood of cases compared with controls (relative expression (RE) = 0.08,... 

    Photocatalytic TiO2@MIL-88A (Fe)/polyacrylonitrile mixed matrix membranes: Characterization, anti-fouling properties, and performance on the removal of natural organic matter

    , Article Chemosphere ; Volume 302 , 2022 ; 00456535 (ISSN) Salehian, S ; Mehdipour, M. H ; Fotovat, F ; Mousavi, S. A ; Sharif University of Technology
    Elsevier Ltd  2022
    Abstract
    Photocatalytic membrane reactors (PMRs), coupling photocatalysts and membranes in a single system, have shown a considerable potential to reduce membrane fouling, which is one of the major drawbacks of using membranes to treat water and wastewater. In this study, the visible light-activated photocatalysts were incorporated into the polyacrylonitrile (PAN) casting solution to synthesize the photocatalytic composite membranes. The physicochemical properties and the morphology of the membranes and photocatalysts were characterized by attenuated total reflectance Fourier transform infrared spectroscopy (ATR-FTIR), X-ray diffraction analysis (XRD), ultraviolet–visible diffuse reflectance... 

    Amyloid fibril reduction through covalently modified lysine in HEWL and insulin

    , Article Archives of Biochemistry and Biophysics ; Volume 727 , 2022 ; 00039861 (ISSN) Rezaei, M ; Kalhor, H. R ; Sharif University of Technology
    Academic Press Inc  2022
    Abstract
    Proteins possess a variety of nucleophiles, which can carry out different reactions in the functioning cells. Proteins endogenously and synthetically can be modified through their nucleophilic sites. The roles of these chemical modifications have not been completely revealed. These modifications can alter the protein folding process. Protein folding directly affects the function of proteins. If an error in protein folding occurs, it may cause protein malfunction leading to several neurodegenerative disorders such as Alzheimer's and Parkinson's. In this study, Hen Egg White Lysozyme (HEWL) and bovine insulin, as model proteins for studying the amyloid formation, were covalently attached with... 

    Supercritical carbon dioxide utilization in drug delivery: Experimental study and modeling of paracetamol solubility

    , Article European Journal of Pharmaceutical Sciences ; Volume 177 , 2022 ; 09280987 (ISSN) Bagheri, H ; Notej, B ; Shahsavari, S ; Hashemipour, H ; Sharif University of Technology
    Elsevier B.V  2022
    Abstract
    In the present study, the solubility of paracetamol in supercritical CO2 is measured at temperatures between 311 and 358 K and pressures between 95 and 265 bar. It was shown that the solubility of paracetamol through a static solubility measurement method was between 0.3055 × 10−6 to 16.3582 × 10−6 based on mole fraction. The obtained experimental solubility data revealed the direct effect of pressure on the paracetamol experimental data, while the temperature has a dual effect of both increasing and decreasing effect considering the shifting point known as crossover pressure which was measured to be around 110 bar for paracetamol. Besides, two theoretical approaches were applied to predict... 

    The effects of supervised and non-supervised upper limb virtual reality exercises on upper limb sensory-motor functions in patients with idiopathic Parkinson's disease

    , Article Human Movement Science ; Volume 85 , 2022 ; 01679457 (ISSN) Hashemi, Y ; Taghizadeh, G ; Azad, A ; Behzadipour, S ; Sharif University of Technology
    Elsevier B.V  2022
    Abstract
    Background: Impairments of upper limb (UL) sensory-motor functions are common in Parkinson's disease (PD). Virtual reality exercises may improve sensory-motor functions in a safe environment and can be used in tele-rehabilitation. This study aimed to investigate the effects of supervised and non-supervised UL virtual reality exercises (ULVRE) on UL sensory-motor functions in patients with idiopathic PD. Methods: In this clinical trial study, 45 patients with idiopathic PD (29 male) by mean ± SD age of 58.64 ± 8.69 years were randomly allocated to either the control group (conventional rehabilitation exercises), supervised ULVRE or non-supervised ULVRE. Interventions were 24 sessions, 3... 

    Electrochemical and computational studies of bio-mimicked Ti3C2Tx MXene-based sensor with multivalent interface

    , Article Journal of Colloid and Interface Science ; Volume 623 , 2022 , Pages 1063-1074 ; 00219797 (ISSN) Ranjbar, S ; Ashari Astani, N ; Atabay, M ; Naseri, N ; Esfandiar, A ; Reza Ejtehadi, M ; Sharif University of Technology
    Academic Press Inc  2022
    Abstract
    Two-dimensional MXenes are the newly emerging family of nanomaterials with competitive performance for nano-device development. Surface functional groups and abundant binding sites make these materials ideal candidates for sensor applications. Herein, we report the successful fabrication of a MXene-based nano-bio device for capturing, sensing, and filtering the Escherichia coli (E. coli) bacteria. Mannose carbohydrate, which binds strongly to E.coli's fimH protein via glucan multivalent interactions, is used as the bio-receptor element. MXene's structure was engineered to guarantee efficient E. coli capturing without mannose detachment. Electrochemical impedance spectroscopy (EIS) and cyclic... 

    Dynamics of electrostatic interaction and electrodiffusion in a charged thin film with nanoscale physicochemical heterogeneity: Implications for low-salinity waterflooding

    , Article Colloids and Surfaces A: Physicochemical and Engineering Aspects ; Volume 650 , 2022 ; 09277757 (ISSN) Pourakaberian, A ; Mahani, H ; Niasar, V ; Sharif University of Technology
    Elsevier B.V  2022
    Abstract
    The slow kinetics of wettability alteration toward a more water-wetting state by low-salinity waterflooding (LSWF) in oil-brine-rock (OBR) systems is conjectured to be pertinent to the electrokinetic phenomena in the thin brine film. We hypothesize that the nanoscale physicochemical heterogeneities such as surface roughness and surface charge heterogeneity at the rock/brine interface control further the dynamics of electrodiffusion and electrostatic disjoining pressure (Πel), thus the time-scale and the magnitude of the low salinity effect (LSE). In this regard, film-scale computational fluid dynamics (CFD) simulations were performed. The coupled Poisson-Nernst-Planck (PNP) equations were... 

    HELIOS: High-speed sequence alignment in optics

    , Article PLoS Computational Biology ; Volume 18, Issue 11 , 2022 ; 1553734X (ISSN) Maleki, E ; Akbari Rokn Abadi, S ; Koohi, S ; Sharif University of Technology
    Public Library of Science  2022
    Abstract
    In response to the imperfections of current sequence alignment methods, originated from the inherent serialism within their corresponding electrical systems, a few optical approaches for biological data comparison have been proposed recently. However, due to their low performance, raised from their inefficient coding scheme, this paper presents a novel all-optical high-throughput method for aligning DNA, RNA, and protein sequences, named HELIOS. The HELIOS method employs highly sophisticated operations to locate character matches, single or multiple mutations, and single or multiple indels within various biological sequences. On the other hand, the HELIOS optical architecture exploits... 

    Comparisons of lumbar spine loads and kinematics in healthy and non-specific low back pain individuals during unstable lifting activities

    , Article Journal of Biomechanics ; Volume 144 , 2022 ; 00219290 (ISSN) Heidari, E ; Arjmand, N ; Kahrizi, S ; Sharif University of Technology
    Elsevier Ltd  2022
    Abstract
    Evaluation of spinal loads in patients with low back pain (LBP) is essential to prevent further lumbar disorders. Many studies have investigated the relationship between lifting task variables and lumbar spine loads during manual lifting activities. The nature of the external load (stable versus unstable loads) is an important variable that has received less attention. Therefore, the present study aimed to measure trunk kinematics and estimate compressive-shear loads on the lumbar spine under lifting a 120 N stable load and 120 ± 13.63 N sensual unstable load in 16 healthy and 16 non-specific LBP individuals during lifting activities. The maximal lumbar loads were estimated using a... 

    CaZnO-based nanoghosts for the detection of ssDNA, pCRISPR and recombinant SARS-CoV-2 spike antigen and targeted delivery of doxorubicin

    , Article Chemosphere ; Volume 306 , 2022 ; 00456535 (ISSN) Rabiee, N ; Akhavan, O ; Fatahi, Y ; Ghadiri, A. M ; Kiani, M ; Makvandi, P ; Rabiee, M ; Nicknam, M. H ; Saeb, M. R ; Varma, R. S ; Ashrafizadeh, M ; Nazarzadeh Zare, E ; Sharifi, E ; Lima, E. C ; Sharif University of Technology
    Elsevier Ltd  2022
    Abstract
    Overexpression of proteins/antigens and other gene-related sequences in the bodies could lead to significant mutations and refractory diseases. Detection and identification of assorted trace concentrations of such proteins/antigens and/or gene-related sequences remain challenging, affecting different pathogens and making viruses stronger. Correspondingly, coronavirus (SARS-CoV-2) mutations/alterations and spread could lead to overexpression of ssDNA and the related antigens in the population and brisk activity in gene-editing technologies in the treatment/detection may lead to the presence of pCRISPR in the blood. Therefore, the detection and evaluation of their trace concentrations are of... 

    Fullerene C60 nanoparticle attenuates pain and tumor necrosis factor-α protein expression in the hippocampus following diabetic neuropathy in rats

    , Article Physiology and Pharmacology (Iran) ; Volume 26, Issue 4 , 2022 , Pages 451-458 ; 24765236 (ISSN) Namdar, F ; Bahrami, F ; Bahari, Z ; Ghanbari, B ; Shahyad, S ; Mohammadi, M. T ; Sharif University of Technology
    Iranian Society of Physiology and Pharmacology  2022
    Abstract
    Introduction: Diabetic neuropathy is a common complication of diabetes mellitus. It is associated with nerve damage due to oxidative stress and high levels of pro-inflammatory mediators. In the present study, we examined the anti-nociceptive effects of Fullerene nanoparticle, as a potent anti-oxidant, during diabetic neuropathy. Methods: Diabetes mellitus induced through injection of streptozotocin (STZ) (40 mg/kg). Four groups were used in the study as follows: the control, control+fullerene, diabetes, and diabetes +fullerene groups. All four groups received sesame oil. Treatment rats received fullerene C60 (1mg/kg/day) for 9 weeks by intra-gastric gavage. Then, cold allodynia, histology,... 

    Performance enhancement of an uncertain nonlinear medical robot with optimal nonlinear robust controller

    , Article Computers in Biology and Medicine ; Volume 146 , 2022 ; 00104825 (ISSN) Azizi, S ; Soleimani, R ; Ahmadi, M ; Malekan, A ; Abualigah, L ; Dashtiahangar, F ; Sharif University of Technology
    Elsevier Ltd  2022
    Abstract
    So the design and control of an accurate robot for this purpose is very critical for saving the patients. Modification of the model and designing two optimized nonlinear robust controllers for the first time for the parallel manipulator medical robot and cardiopulmonary resuscitation. The main objective of the current study in order to decrease the overshoot and increase the accuracy of the position and convergence speed and robustness to destructive factors affecting the precision of the robot. In this paper firstly, the kinematics and dynamics analysis of a translational parallel manipulator robot is presented and a non-linear model in the presence of uncertainties, disturbances, and... 

    Adjacent segments biomechanics following lumbar fusion surgery: a musculoskeletal finite element model study

    , Article European Spine Journal ; Volume 31, Issue 7 , 2022 , Pages 1630-1639 ; 09406719 (ISSN) Ebrahimkhani, M ; Arjmand, N ; Shirazi-Adl, A ; Sharif University of Technology
    Springer Science and Business Media Deutschland GmbH  2022
    Abstract
    Purpose: This study exploits a novel musculoskeletal finite element (MS-FE) spine model to evaluate the post-fusion (L4–L5) alterations in adjacent segment kinetics. Methods: Unlike the existing MS models with idealized representation of spinal joints, this model predicts stress/strain distributions in all passive tissues while organically coupled to a MS model. This generic (in terms of musculature and material properties) model uses population-based in vivo vertebral sagittal rotations, gravity loads, and an optimization algorithm to calculate muscle forces. Simulations represent individuals with an intact L4–L5, a preoperative severely degenerated L4–L5 (by reducing the disc height by ~... 

    Reduced polydopamine coated graphene for delivery of Hset1 antisense as A photothermal and gene therapy of breast cancer

    , Article Journal of Drug Delivery Science and Technology ; Volume 73 , 2022 ; 17732247 (ISSN) Babavalian, A ; Tekie, F. S. M ; Ayazi, H ; Ranjbar, S ; Varshochian, R ; Rad-Malelkshahi, M ; Akhavan, O ; Dinarvand, R ; Sharif University of Technology
    Editions de Sante  2022
    Abstract
    Breast cancer is the most prevalent type of cancer in women; hence, many researches have been focused on developing effective treatment protocols. In this study, a novel nanocarrier was fabricated for gene and photothermal combination cancer therapy by conjugating histone methyltransferase complex subunit SET1 (hSET1) on reduced polydopamine coated graphene oxide nanosheets (rGO-PDA). The rGO-PDA nanocarriers provide higher near-infrared absorption and further integrating with hSET1 antisense as an anticancer gene that down-regulates the amount of hSET1 overexpressed and suppresses the proliferation of cancer cells. The nanoplatform was prepared by polymerizing of dopamine, a mussel adhesive... 

    Alginate-based multifunctional films incorporated with sulfur quantum dots for active packaging applications

    , Article Colloids and Surfaces B: Biointerfaces ; Volume 215 , 2022 ; 09277765 (ISSN) Riahi, Z ; Priyadarshi, R ; Rhim, J. W ; Lotfali, E ; Bagheri, R ; Pircheraghi, G ; Sharif University of Technology
    Elsevier B.V  2022
    Abstract
    Sulfur quantum dots (SQDs) were fabricated using a facile hydrothermal method and used for the preparation of functional food packaging film and compared the properties with other sulfur-based fillers like elemental sulfur (ES) and sulfur nanoparticles (SNP). The SQDs have an average size of 5.3 nm and were very stable in aqueous suspension. Unlike other sulfur-based fillers, the SQD showed high antioxidant, antibacterial and antifungal activity, but no cytotoxicity was found for L929 mouse fibroblasts even after long-term exposure of 48 h. When sulfur-based fillers were added to the alginate film, SQD was more evenly dispersed in the polymer matrix than SNP and ES. The addition of SQD to... 

    Poly-L-lysine/hyaluronan nanocarriers as a novel nanosystem for gene delivery

    , Article Journal of Microscopy ; Volume 287, Issue 1 , 2022 , Pages 32-44 ; 00222720 (ISSN) Souri, M ; Bagherzadeh, M. A ; Mofazzal Jahromi, M. A ; Mohammad-Beigi, H ; Abdoli, A ; Mir, H ; Roustazadeh, A ; Pirestani, M ; Sahandi Zangabad, P ; Kiani, J ; Bakhshayesh, A ; Jahani, M ; Joghataei, M. T ; Karimi, M ; Sharif University of Technology
    John Wiley and Sons Inc  2022
    Abstract
    The present research comes up with a novel DNA-loaded poly-L-lysine (PLL)/hyaluronan (HA) nanocarrier (DNA-loaded PLL/HA NCs) for gene delivery applications, as a promising candidate for gene delivery into diverse cells. A straightforward approach was employed to prepare such a nanosystem through masking DNA-loaded PLL molecules by HA. Fourier-transform infrared (FTIR) spectroscopy, dynamic light scattering (DLS), field emission-scanning electron microscopy (FE-SEM) and transmission electron microscopy (TEM) were used to analyse the interaction of the molecules as well as the physicochemical properties of the NCs. The NCs showed a negative charge of –24 ± 3 mV, with an average size of 138 ±... 

    Electrospun Ag-decorated reduced GO-graft-chitosan composite nanofibers with visible light photocatalytic activity for antibacterial performance

    , Article Chemosphere ; Volume 299 , 2022 ; 00456535 (ISSN) Asgari, S ; Mohammadi Ziarani, G ; Badiei, A ; Setayeshmehr, M ; Kiani, M ; Pourjavadi, A ; Sharif University of Technology
    Elsevier Ltd  2022
    Abstract
    The treatment of water contaminated by bacteria is becoming a necessity. The nanomaterials possessing both intrinsic antibacterial properties and photocatalytic activity are excellent candidates for water disinfection. The powdered form of nanomaterials can be aggregated while embedding the nanomaterials into the NFs can overcome the limitation and enhance the photocatalytic activity and transition from UV-light to visiblelight. Here, graphene oxide (GO) was synthesized, grafted to chitosan, and decorated with silver nanoparticles (Ag NPs) to produce Ag-decorated reduced GO-graft-Chitosan (AGC) NPs. The blends of polyacrylonitrile (PAN) and AGC NPs were prepared in various concentrations of... 

    Promoting the adoption of residential water conservation behaviors as a preventive policy to sustainable urban water management

    , Article Journal of Environmental Management ; Volume 313 , 2022 ; 03014797 (ISSN) Shahangian, S. A ; Tabesh, M ; Yazdanpanah, M ; Zobeidi, T ; Raoof, M. A ; Sharif University of Technology
    Academic Press  2022
    Abstract
    As concerning with water insecurity driven by water scarcity threatens the lives and livelihoods of humanity worldwide, urban water demand management is focused on promoting residential water conservation behaviors (WCBs) as a critical policy response to water scarcity. However, urban water conservation initiatives cannot be successful unless households involve in residential WCBs voluntarily by adopting water curtailment and/or water-efficiency actions. Thus, understanding motivations and mechanisms underlying accepting these two types of WCBs and interpreting their distinctions are primary policy considerations to make sustainable water consumption behaviors. Hence, the purpose of this... 

    Synthesis of green benzamide-decorated UiO-66-NH2 for biomedical applications

    , Article Chemosphere ; Volume 299 , 2022 ; 00456535 (ISSN) Rabiee, N ; Ghadiri, A. M ; Alinezhad, V ; Sedaghat, A ; Ahmadi, S ; Fatahi, Y ; Makvandi, P ; Saeb, M. R ; Bagherzadeh, M ; Asadnia, M ; Varma, R. S ; Lima, E. C ; Sharif University of Technology
    Elsevier Ltd  2022
    Abstract
    Metal-organic frameworks (MOFs) biocompatible systems can host enzymes/bacteria/viruses. Herein we synthesized a series of fatty acid amide hydrolase (FAAH)-decorated UiO-66-NH2 based on Citrus tangerine leaf extract for drug delivery and biosensor applications. Five chemically manipulated FAAH-like benzamides were localized on the UiO-66-NH2 surface with physical interactions. Comprehensive cellular and molecular analyses were conducted on HEK-293, HeLa, HepG2, PC12, MCF-7, and HT-29 cell lines (cytotoxicity assessment after 24 and 48 h). MTT results proved above 95 and 50% relative cell viability in the absence and presence of the drug, respectively. A complete targeted drug-releasing...