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    Theoretical study of interaction between tacrine and finite-length Al-doped carbon and boron nitride nanotubes: A semiempirical drug delivery study in thermodynamic view

    , Article Oriental Journal of Chemistry ; Vol. 30, issue. 4 , 2014 , p. 1805-1813 Zeighami, N ; Gholami, M. R ; Aghaie, M ; Boshra, A ; Sharif University of Technology
    Abstract
    In order to extend our previous theoretical calculations that dealt with the thermochemistry of doping the single walled boron nitride nanotubes, BNNTs, and carbon nanotubes, CNTs, with alminium atoms [1], we have used the AM1, PM3, and PM6 semiempirical methods to investigate the interaction of the tacrine molecule (a drug for the treatment of Alzheimer's disease) with the side-walls of aluminum doped boron nitride and carbon nanotubes in thermodynamic views. At first, the frequency calculations were carried out to confirm the stability of the involved structures. In addition, the theoretical thermodynamic study of tacrine adsorption onto the considered nanotubes was performed and the... 

    Identifying brain functional connectivity alterations during different stages of alzheimer’s disease

    , Article International Journal of Neuroscience ; 2020 Ahmadi, H ; Fatemizadeh, E ; Motie-Nasrabadi, A ; Sharif University of Technology
    Taylor and Francis Ltd  2020
    Abstract
    Purpose: Alzheimer's disease (AD) starts years before its signs and symptoms including the dementia become apparent. Diagnosis of the AD in the early stages is important to reduce the speed of brain decline. Aim of the study: Identifying the alterations in the functional connectivity of the brain during the disease stages is among the main important issues in this regard. Therefore, in this study, the changes in the functional connectivity during the AD stages were analyzed. Materials and methods: By employing the functional magnetic resonance imaging (fMRI) data and graph theory, weighted undirected graphs of the whole-brain and default mode network (DMN) network were investigated... 

    Study of Brain Oddball Response to Olfactory Stimuli as Indicator in Dementia Disorders

    , M.Sc. Thesis Sharif University of Technology Sedghizadeh, Mohammad Javad (Author) ; Karbalaee Aghajan, Hamid (Supervisor)
    Abstract
    High-frequency oscillations of the frontal cortex are involved in functions of the brain that fuse processed data from different sensory modules or bind them with elements stored in the memory. These oscillations also provide inhibitory connections to neural circuits that perform lower-level processes. Deficit in the performance of these oscillations has been examined as a marker for Alzheimer’s disease (AD). Additionally, the neurodegenerative processes associated with AD, such as the deposition of amyloid-beta plaques, do not occur in a spatially homogeneous fashion and progress more prominently in the medial temporal lobe in the early stages of the disease. This region of the brain... 

    Network Analysis of EEG Data of Alzheimer’s Disease

    , M.Sc. Thesis Sharif University of Technology Tahaei, Marzieh Sadat (Author) ; Jalili, Mahdi (Supervisor)
    Abstract
    Recently complex networks, have been widely used as a model to study the behavior of human brain. By affecting different parts the brain, Neuronal disorders change the structure of functional brain networks. Investigating these changes using different graph theory metrics can be a useful methodology for human brain analysis in health and disease. Alzheimer's disease (AD) is a neural disease causing impairment in different brain activities including memory and cognition.The aim of this study is to construct the functional brain network of 17 AD patients and 17 healthy control subjects at resting state condition and analyzing them using the theory of complex networks in order to achieve a... 

    Molecular Dynamics Simulation of Aβ42 Neurotoxicity Inhibition in Order to Alzheimer’s Disease Treatment

    , M.Sc. Thesis Sharif University of Technology Khandan, Vahid (Author) ; Firoozabadi, Bahar (Supervisor) ; Saeedi, Mohammad Saeed (Supervisor)
    Abstract
    Alzheimer’s disease (AD) is the most common type of dementia in the elderly. The neuropathology and treatment of AD is not precisely determined yet, but according to the pathological studies, AD is associated with presence of toxic soluble oligomers and insoluble senile plaques formed by amyloidosis of Amyloid Beta (Aβ) in neocortical region of brain. An attractive therapeutic approach to treat AD is to identify small ligands that are capable of binding to critical residues in order to inhibit or reverse Aβ amyloidosis process as source of neurotoxicity. In this area, therapeutic efforts designed various organic agents and most of them focused on the N-terminal sequence of Aβ. The aim of... 

    Sensing of alzheimer's disease and multiple sclerosis using nano-bio interfaces

    , Article Journal of Alzheimer's Disease ; Volume 59, Issue 4 , 2017 , Pages 1187-1202 ; 13872877 (ISSN) Hajipour, M. J ; Ghasemi, F ; Aghaverdi, H ; Raoufi, M ; Linnef, U ; Atyabi, F ; Nabipour, I ; Azhdarzadeh, M ; Derakhshankhah, H ; Lotfabadi, A ; Bargahi, A ; Alekhamis, Z ; Aghaie, A ; Hashemi, E ; Tafakhori, A ; Aghamollaii, V ; Mashhadi, M. M ; Sheibani, S ; Vali, H ; Mahmoudi, M ; Sharif University of Technology
    Abstract
    It is well understood that patients with different diseases may have a variety of specific proteins (e.g., type, amount, and configuration) in their plasmas. When nanoparticles (NPs) are exposed to these plasmas, the resulting coronas may incorporate some of the disease-specific proteins. Using gold (Au) NPs with different surface properties and corona composition, we have developed a technology for the discrimination and detection of two neurodegenerative diseases, Alzheimer's disease (AD) and multiple sclerosis (MS). Applying a variety of techniques, including UV-visible spectra, colorimetric response analyses and liquid chromatography-tandem mass spectrometry, we found the corona-NP... 

    Designing a new multifunctional peptide for metal chelation and Aβ inhibition

    , Article Archives of Biochemistry and Biophysics ; Volume 653 , 2018 , Pages 1-9 ; 00039861 (ISSN) Shamloo, A ; Asadbegi, M ; Khandan, V ; Amanzadi, A ; Sharif University of Technology
    Academic Press Inc  2018
    Abstract
    According to the Amyloid hypothesis, as the foremost scientific explanation for Alzheimer Disease (AD), the neuropathology of AD is related to toxic fragments of amyloid beta (Aβ) protein. Based on this hypothesis, an attractive therapeutic approach was demonstrated to identify multifunctional peptides able to modulate Aβ pathologies as the source of AD. On this premise, a bifunctional polypeptide based on the iAβ5p lead compound, was designed to inhibit Aβ aggregation and free metal ions. Herein, the efficacy of this novel drug in Zn2+ and Cd2+ ion chelation was examined through an integrated technique comprising combined Docking, QM, and MD simulations. MD relaxation of a set of probable... 

    Transformer-based deep neural network language models for Alzheimer’s disease risk assessment from targeted speech

    , Article BMC Medical Informatics and Decision Making ; Volume 21, Issue 1 , 2021 ; 14726947 (ISSN) Roshanzamir, A ; Aghajan, H ; Soleymani Baghshah, M ; Sharif University of Technology
    BioMed Central Ltd  2021
    Abstract
    Background: We developed transformer-based deep learning models based on natural language processing for early risk assessment of Alzheimer’s disease from the picture description test. Methods: The lack of large datasets poses the most important limitation for using complex models that do not require feature engineering. Transformer-based pre-trained deep language models have recently made a large leap in NLP research and application. These models are pre-trained on available large datasets to understand natural language texts appropriately, and are shown to subsequently perform well on classification tasks with small training sets. The overall classification model is a simple classifier on... 

    Well-posedness of Two Mathematical Models for Alzheimer's Disease

    , M.Sc. Thesis Sharif University of Technology Yarmohammadi, Parisa (Author) ; Hesaaraki, Mahmoud (Supervisor)
    Abstract
    In season 1, we introduce a mathematical model of the in vivo progression of Alzheimer’s disease with focus on the role of prions in memory impairment. Our model consists of differential equations that describe the dynamic formation of Aβ -amyloid plaques based on the concentrations of Aβ oligomers, PrPC proteins, and the Aβ-×-PrPC complex, which are hypothesized to be responsible for synaptic tox- icity. We prove the well posedness of the model and provided stability results for its unique equilibrium, when the polymerization rate of β-amyloid is constant and also when it is described by a power law. In seson 2, We consider the existence and uniqueness of solutions of an initial-boundary... 

    Synchronization Analysis of EEG-Based Brain Functional Network

    , M.Sc. Thesis Sharif University of Technology Alamfard, Vahid (Author) ; Manzuri, Mohammad Taghi (Supervisor)
    Abstract
    It is believed that the synchronized activity of different brain areas, is the main cause of information binding inside the brain. Tis is definitely one of the most exciting challenges in modelling modern complex systems. Brain disorders such as schizophrenia,Alzheimer’s disease, epilepsy, autism and Parkinson’s disease are associated with abnormal synchronization abilities of neural networks. Functional connections can be assessed indirectly by measuring the electrophysiological criteria of ynchronization.Traditionally, in the study of neurophysiological, synchronizations are assessed by analyzing the coherence of frequency-domain characteristics of time series in standard methods for... 

    Non-invasive auditory brain stimulation for gamma-band entrainment in dementia patients: An EEG dataset

    , Article Data in Brief ; Volume 41 , 2022 ; 23523409 (ISSN) Lahijanian, M ; Sedghizadeh, M. J ; Aghajan, H ; Vahabi, Z ; Sharif University of Technology
    Elsevier Inc  2022
    Abstract
    Gamma entrainment has been shown to enhance beta amyloid (Aβ) uptake in mouse models of Alzheimer's disease (AD) as well as improve cognitive symptoms of dementia in both humans and mice. Similar improvements have been reported for both invasive and non-invasive brain stimulation in the gamma oscillatory band, with 40 Hz auditory and visual sensory stimulants employed in non-invasive approaches. Non-invasive stimulation techniques possess the clear advantage of not requiring surgical procedures and can hence be applicable to a wider set of patients. The dataset introduced here was acquired with the aim of examining the network-level mechanisms governing the production of the brain's... 

    Synchronizability of EEG-based functional networks in early alzheimer's disease

    , Article IEEE Transactions on Neural Systems and Rehabilitation Engineering ; Volume 20, Issue 5 , 2012 , Pages 636-641 ; 15344320 (ISSN) Tahaei, M. S ; Jalili, M ; Knyazeva, M. G ; Sharif University of Technology
    IEEE  2012
    Abstract
    Recently graph theory and complex networks have been widely used as a mean to model functionality of the brain. Among different neuroimaging techniques available for constructing the brain functional networks, electroencephalography (EEG) with its high temporal resolution is a useful instrument of the analysis of functional interdependencies between different brain regions. Alzheimer's disease (AD) is a neurodegenerative disease, which leads to substantial cognitive decline, and eventually, dementia in aged people. To achieve a deeper insight into the behavior of functional cerebral networks in AD, here we study their synchronizability in 17 newly diagnosed AD patients compared to 17 healthy... 

    A perspective to the correlation between brain insulin resistance and alzheimer: medicinal chemistry approach

    , Article Current Diabetes Reviews ; Volume 15, Issue 4 , 2019 , Pages 255-258 ; 15733998 (ISSN) Rabiee, N ; Bagherzadeh, M ; Rabiee, M ; Sharif University of Technology
    Bentham Science Publishers  2019
    Abstract
    Substantial terms have been recognized on the associated risk elements, comorbidities as well as, putative pathophysiological processes of Alzheimer disease and related dementias (ADRDs) as well as, type 2 diabetes mellitus (T2DM), a few from greatest important disease from the moments. Very much is considered regarding the biology and chemistry of each predicament, nevertheless T2DM and ADRDs are an actually similar pattern developing from the similar origins of maturing or synergistic conditions connected by aggressive patho-corporeal terms and continues to be ambiguous. In this depth-critique article, we aimed to investigate all possibilities and represented a novel and applicable... 

    A perspective to the correlation between brain insulin resistance and Alzheimer: Medicinal chemistry approach

    , Article Current Diabetes Reviews ; Volume 15, Issue 4 , 2019 , Pages 255-258 ; 15733998 (ISSN) Rabiee, N ; Bagherzadeh, M ; Rabiee, M ; Sharif University of Technology
    Bentham Science Publishers  2019
    Abstract
    Substantial terms have been recognized on the associated risk elements, comorbidities as well as, putative pathophysiological processes of Alzheimer disease and related dementias (ADRDs) as well as, type 2 diabetes mellitus (T2DM), a few from greatest important disease from the moments. Very much is considered regarding the biology and chemistry of each predicament, nevertheless T2DM and ADRDs are an actually similar pattern developing from the similar origins of maturing or synergistic conditions connected by aggressive patho-corporeal terms and continues to be ambiguous. In this depth-critique article, we aimed to investigate all possibilities and represented a novel and applicable... 

    EEG Brain Functional Network Analysis in Cortex Level

    , M.Sc. Thesis Sharif University of Technology Pedrood, Bahman (Author) ; Jalili, Mahdi (Supervisor)
    Abstract
    Complex networks science have received tremendous attention in recent years and the brain is one of the systems to which graph theoretical tools have been applied. Alzheimer’s disease (AD) is a neurodegenerative disease affecting many of elderly population. AD changes the anatomy of the brain, which subsequently results in changes in its functions. These changes have been frequently reported in signals recorded from the brain (such as MEG, fMRI and EEG). Among these neuroimaging techniques EEG is one of the most aproprate methods for extracting functional connectivites according to high temporal resolution. In this thesis, we aimed at analyzing the properties of EEG-based functional networks... 

    Hippocmapal Protein Kinase Mζ Overexpression Effect on Cognitive Performance in a Rat Model of Alzheimer’s Disease

    , M.Sc. Thesis Sharif University of Technology Amini, Niloufar (Author) ; Roosta Azad, Reza (Supervisor) ; Gholamipour Badie, Hamid (Supervisor)
    Abstract
    Alzheimer’s disease (AD) is a neurodegenerative disease which results in synaptic depression and complete destruction in neurons in the final stages. Many pathogenesis has so far been attributed to AD but the most commonly explained pathomechanism is based on the amyloid cascade theory which results in formation of amyloid beta plaques outside and hyper phosphorylated neurofibrillary tangles of tau protein inside the neurons. One of the most well-known symptoms of AD is the disability to learn and form new memories and transform them into long term memory. The most commonly studied mechanism in memory formation, is the “long term potentiation”. Although many mechanisms and molecules are... 

    Comparative Analysis of the Effect of Gamma-band Entrainment through Auditory Stimulation in AD Patients and Healthy Controls

    , M.Sc. Thesis Sharif University of Technology Lahijanian, Mojtaba (Author) ; Aghajan, Hamid (Supervisor)
    Abstract
    As the most widespread form of mental disorders, Alzheimer’s disease (AD) remains among the main challenges in neurology and in the field of neuroscience. There are still no effective drugs to cure this disease or slow its progress, and prevention methods are still not even close to having established records. However, the onset of AD has been linked to certain dysfunctions of the oscillatory frequencies of the affected brain mainly in the gamma band. Hence, an approach to consider for reversing the damaging effects of AD could involve reviving such oscillations through stimulating the neuronal networks in the brain that are known to be the source of these oscillations. A recent research has... 

    Interdisciplinary challenges and promising theranostic effects of nanoscience in Alzheimer's disease

    , Article RSC Advances ; Volume 2, Issue 12 , 2012 , Pages 5008-5033 ; 20462069 (ISSN) Laurent, S ; Ejtehadi, M. R ; Rezaei, M ; Kehoe, P. G ; Mahmoudi, M ; Sharif University of Technology
    2012
    Abstract
    During the last decade, reports show that the incidence and prevalence of Alzheimer's disease (AD) and other dementias have significantly increased. AD poses an enormous escalating threat to health services and resources. Early diagnosis of AD is recognized as one of the major challenges and primary aims in scientific communities. With the arrival of nanoscience and nanotechnology to medicine, hopes for early diagnosis and treatment of AD have considerably increased. To this end, nanobioresearchers are focused on three major areas consisting of early detection and recognition, biological markers and diagnosis, and pharmacotherapy. Several efforts are in progress for the discovery of new... 

    Parallel nonlinear analysis of weighted brain's gray and white matter images for Alzheimer's dementia diagnosis

    , Article Conference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Conference ; 2010 , Pages 5573-5576 ; 1557170X (ISSN) Razavian, S. M ; Torabi, M ; Kim, K ; Sharif University of Technology
    2010
    Abstract
    In this study, we are proposing a novel nonlinear classification approach to discriminate between Alzheimer's Disease (AD) and a control group using T1-weighted and T2-weighted Magnetic Resonance Images (MRI's) of brain. Since T1-weighted images and T2-weighted images have inherent physical differences, obviously each of them has its own particular medical data and hence, we extracted some specific features from each. Then the variations of the relevant eigenvalues of the extracted features were tracked to pick up the most informative ones. The final features were assigned to two parallel systems to be nonlinearly categorized. Considering the fact that AD defects the white and gray regions... 

    Diagnosis of early Alzheimer's disease based on EEG source localization and a standardized realistic head model

    , Article IEEE Journal of Biomedical and Health Informatics ; Volume 17, Issue 6 , 2013 , Pages 1039-1045 ; 21682194 (ISSN) Aghajani, H ; Zahedi, E ; Jalili, M ; Keikhosravi, A ; Vahdat, B. V ; Sharif University of Technology
    2013
    Abstract
    In this paper, distributed electroencephalographic (EEG) sources in the brain have been mapped with the objective of early diagnosis of Alzheimer's disease (AD). To this end, records from a montage of a high-density EEG from 17 early AD patients and 17 matched healthy control subjects were considered. Subjects were in eyes-closed, resting-state condition. Cortical EEG sources were modeled by the standardized low-resolution brain electromagnetic tomography (sLORETA) method. Relative logarithmic power spectral density values were obtained in the four conventional frequency bands (alpha, beta, delta, and theta) and 12 cortical regions. Results show that in the left brain hemisphere, the theta...