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    Recent approaches to mRNA vaccine delivery by lipid-based vectors prepared by continuous-flow microfluidic devices

    , Article Future medicinal chemistry ; Volume 14, Issue 21 , 2022 , Pages 1561-1581 ; 17568927 (ISSN) Ghasemi Toudeshkchouei, M ; Tavakoli, A ; Mohammadghasemi, H ; Karimi, A ; Ai, J ; Rabiee, M ; Rabiee, N ; Sharif University of Technology
    NLM (Medline)  2022
    Abstract
    Advancements in nanotechnology have resulted in the introduction of several nonviral delivery vectors for the nontoxic, efficient delivery of encapsulated mRNA-based vaccines. Lipid- and polymer-based nanoparticles (NP) have proven to be the most potent delivery systems, providing increased delivery efficiency and protection of mRNA molecules from degradation. Here, the authors provide an overview of the recent studies carried out using lipid NPs and their functionalized forms, polymeric and lipid-polymer hybrid nanocarriers utilized mainly for the encapsulation of mRNAs for gene and immune therapeutic applications. A microfluidic system as a prevalent methodology for the preparation of NPs... 

    Engineered Biomimetic Membranes for Organ-on-a-Chip

    , Article ACS Biomaterials Science and Engineering ; Volume 8, Issue 12 , 2022 , Pages 5038-5059 ; 23739878 (ISSN) Rahimnejad, M ; Rasouli, F ; Jahangiri, S ; Ahmadi, S ; Rabiee, N ; Ramezani Farani, M ; Akhavan, O ; Asadnia, M ; Fatahi, Y ; Hong, S ; Lee, J ; Lee, J ; Hahn, S. K ; Sharif University of Technology
    American Chemical Society  2022
    Abstract
    Organ-on-a-chip (OOC) systems are engineered nanobiosystems to mimic the physiochemical environment of a specific organ in the body. Among various components of OOC systems, biomimetic membranes have been regarded as one of the most important key components to develop controllable biomimetic bioanalysis systems. Here, we review the preparation and characterization of biomimetic membranes in comparison with the features of the extracellular matrix. After that, we review and discuss the latest applications of engineered biomimetic membranes to fabricate various organs on a chip, such as liver, kidney, intestine, lung, skin, heart, vasculature and blood vessels, brain, and multiorgans with... 

    Design and Numerical Simulation of a Micro-chip for Separating CTCs from Peripheral Blood

    , M.Sc. Thesis Sharif University of Technology Niknam, Hamid Reza (Author) ; Saeedi, Mohammad Saeed (Supervisor)
    Abstract
    According to studies, cancer is the second leading cause of death in the world and millions of people die from this disease every year. Early diagnosis is one of the most important factors in controlling and treating the disease. The ability of circulating tumor cells to diagnose and monitor the disease has led many researchers to focus on studying and researching these cells in recent years. However, due to the fact that the concentration of this type of cells in the blood is very low, their isolation is associated with challenges. Various methods isolate CTCs based on physical, biological and other differences in characteristics. In this study, we investigate performance of a microfluidic... 

    Numerical Simulation of Micro channel for Cells Counting Based on the Impedance Measurement of Cell Lysate

    , M.Sc. Thesis Sharif University of Technology Khademi, Maryam (Author) ; Saidi, Mohammad Said (Supervisor) ; Sani, Mahdi ($item.subfieldsMap.e)
    Abstract
    Nowadays cell-based microfluidic devices have many applications. One of the applications is disease diagnosis according to number of cells. Cell counting has different methods, such as optical cell counting, flow cytometry, hemocytometry, coulter counters,and so on. One of the methods of cells counting is based on measurement of changes in impedance or conductivity of surrounding medium because ions are released from surface-immobilized cells inside a micr of luidic channel.The method of cell lysate impedance spectroscopy is sensitive enough and it was offered for detecting and enumerating CD4+ cells in HIV patients. In this study,... 

    Rheology Effects on Reaction-diffusion Mechanisms in a Y-shaped Micro Fluidic Mixer

    , M.Sc. Thesis Sharif University of Technology Hellisaz, Hamed (Author) ; Saeedi, Mohammad Hassan (Supervisor) ; Kazemzadeh Hannani, Siamak ($item.subfieldsMap.e)
    Abstract
    Numerous applications of Lab on a Chips (LOCs) in chemical/biochemical analyses as well as the emergence of advanced methods for their manufacture attracts many researchers’ attention to these micro instruments. Low sample volume consumption and their high controllability are accounted as the main advantage of LOC systems. Micromixers are among the main components of any LOC in which mixing and/or reaction among two components occur. Micromixers have many potential applications in biological and medical sciences, and so they are repeatedly charged by biofluids. Due to sensibility of biofluids, to avoid disintegration, applying electroosmotic flow instead of pressure-induced flow has priority... 

    Separation and Microfluidic Analysis of one Cancer Biomarker (Exosome) by Means of Microfluidic Chip Microfluidc Analysis Exosome Toward Liquid Biopsy for Cancer Tumor Cell

    , M.Sc. Thesis Sharif University of Technology Madani, Mohammad (Author) ; Saidi, Mohammad Said (Supervisor) ; Firouzabadi, Bahar (Co-Supervisor)
    Abstract
    The recent breakthroughs in the lab-on-a-chip technology will not be directly used as clinical devices unless the specific applications are carefully tested and certified. As there is a growing trend towards microfluidic devices for biomedical research, an active microfluidic device was developed. Common microfabrication methods were used to develop a microchip to separate and concentrate exosome and particular cell based on the dielectrophoresis phenomenon. Unique capabilities of the dielectrophoresis phenomenon make it a powerful tool for micro particle manipulation in micro scale. In this research, geometry for the mentioned purpose is designed and optimized. Three-dimensional... 

    Design and Simulation of CMOS Based Magnetic Sensor for Biosensing Applications

    , M.Sc. Thesis Sharif University of Technology Mafi, Alireza (Author) ; Akbari, Mahmood (Supervisor) ; Fotowat-Ahmady, Ali (Supervisor)
    Abstract
    This paper presents a scalable and ultrasensitive magnetic biosensing scheme based on on-chip LC resonance frequency-shifting. The sensor transducer gain is demonstrated as being location-dependent on the sensing surface and proportional to the local polarization magnetic field strength |B|2 generated by the sensing inductor. To improve the gain uniformity, a periodic coil is proposed as a substitution for the standard process coil. As an implementation example, the circuit is designed in a 65nm CMOS process. The spatially uniform sensor gain of the array is verified by COMSOL simulations. Overall, the presented sensor demonstrates an improvement in the uniformity of the inductor’s magnetic... 

    Numerical Study of Enhancement of Inflection Point Focusing for Blood Cell Separation

    , M.Sc. Thesis Sharif University of Technology Mirtalebi, Elnaz (Author) ; Moosavi, Ali (Supervisor) ; Sadrhosseini, Hani (Co-Supervisor)
    Abstract
    Today, the determination and therapy of numerous illnesses, including malignant growth, relies upon the information and assessment of platelets, so blood testing and cell examination is fundamental to survey the movement of disease. The lab on a chip innovation is utilized as an extremely productive device in cell studies. The lab on a chip is used as a foundation and a substrate for making a legitimate stream for cell processes in medication. This innovation is a gadget or framework with millimeters or centimeters aspects like a chip, and it performs research facility handling on a micron-scale. In spite of the fact that it has a few impediments, it has so many values; for example, it... 

    Design and Manufacturing of a Setup for Solid-state Nanopore Fabrication

    , M.Sc. Thesis Sharif University of Technology Bayat, Alireza (Author) ; Akbari, Javad (Supervisor) ; Taghipour, Mojtaba (Supervisor)
    Abstract
    The aim of the current research is to study the process of making a solidstate nanopore by molding from PDMS polymer and to make a laboratory sample of a solidstate nanopore manufacturing device using this method. Solid-state nanopores are used to control ion transport in microfluidic channels,lab-on-a-chip detection to study nucleic acids and proteins, desalination, nanofluidic transistors,single-cell sensing tools, and particle classification. In general, the smaller the nanopore, the shorter the length and the higher the mechanical stability, the better the performance. In this research, chips have been made on which there is a blade with a sharpness of 10 nanometers and a height of 10... 

    Urine Analysis by a Microfluidic Paper-Based Device for Renal Function Test

    , M.Sc. Thesis Sharif University of Technology Pourghanbari Marvast, Mohadeseh (Author) ; Saadatmand, Maryam (Supervisor)
    Abstract
    Chronic kidney disease is one of the silent diseases that progresses slowly, often without symptoms, and can eventually lead to kidney loss. Early detection of this disease can help diagnose it and prevent further problems. Urinary creatinine is an effective biomarker for early diagnosis of chronic kidney disease, but methods available in clinics are problematic for people living in disadvantaged areas because of the high cost and the need for 24-hour urine collection. Currently, paper-based microfluidic devices are being developed because they are easy to manufacture, inexpensive, the fluid is permeable by capillary force, and no additional equipment is needed. In this work, to fabricate a... 

    Temperature rise in electroosmotic flow of typical non-newtonian biofluids through rectangular microchannels

    , Article Journal of Heat Transfer ; Volume 136, Issue 3 , March , 2014 ; ISSN: 00221481 Yavari, H ; Sadeghi, A ; Saidi, M. H ; Chakraborty, S ; Sharif University of Technology
    Abstract
    Electroosmosis is the main mechanism for flow generation in lab-on-a-chip (LOC) devices. The temperature rise due to the Joule heating phenomenon, associated with the electroosmosis, may be detrimental for samples being considered in LOCs. Hence, a complete understanding of the heat transfer physics associated with the electroosmotic flow is of high importance in design and active control of LOCs. The objective of the present study is to estimate the temperature rise and the thermal entry length in electroosmotic flow through rectangular microchannels, having potential applications in LOC devices. Along this line, the power-law rheological model is used to account for non-Newtonian behavior... 

    3D modeling of reaction-diffusion dynamics in an electrokinetic Y-shaped microreactor

    , Article Sensors and Actuators, B: Chemical ; Volume 235 , 2016 , Pages 343-355 ; 09254005 (ISSN) Helisaz, H ; Saidi, M. H ; Sadeghi, A ; Sharif University of Technology
    Elsevier  2016
    Abstract
    We perform a 3D numerical modeling of reaction-diffusion dynamics in a Y-shaped microreactor, considering a fully developed combined electroosmotic and pressure-driven flow. The governing equations, based on a second-order irreversible reaction, are solved invoking a finite-volume approach for a non-uniform grid system. We demonstrate that the reaction is highly position dependent: more production is observed adjacent to the horizontal walls for a favorable pressure gradient, whereas both the wall and centerline are the regions of highest production when a back pressure is applied. We further show that, to achieve the maximum production rate, the EDL should be thick enough, the pressure... 

    Challenge in particle delivery to cells in a microfluidic device

    , Article Drug Delivery and Translational Research ; Volume 8, Issue 3 , 2018 , Pages 830-842 ; 2190393X (ISSN) Moghadas, H ; Saidi, M. S ; Kashaninejad, N ; Nguyen, N. T ; Sharif University of Technology
    Springer Verlag  2018
    Abstract
    Micro and nanotechnology can potentially revolutionize drug delivery systems. Novel microfluidic systems have been employed for the cell culture applications and drug delivery by micro and nanocarriers. Cells in the microchannels are under static and dynamic flow perfusion of culture media that provides nutrition and removes waste from the cells. This exerts hydrostatic and hydrodynamic forces on the cells. These forces can considerably affect the functions of the living cells. In this paper, we simulated the flow of air, culture medium, and the particle transport and deposition in the microchannels under different angles of connection inlet. It was found that the shear stress induced by the... 

    Design and simulation of a microfluidic device for acoustic cell separation

    , Article Ultrasonics ; Volume 84 , March , 2018 , Pages 234-243 ; 0041624X (ISSN) Shamloo, A ; Boodaghi, M ; Sharif University of Technology
    Elsevier B.V  2018
    Abstract
    Experimental acoustic cell separation methods have been widely used to perform separation for different types of blood cells. However, numerical simulation of acoustic cell separation has not gained enough attention and needs further investigation since by using numerical methods, it is possible to optimize different parameters involved in the design of an acoustic device and calculate particle trajectories in a simple and low cost manner before spending time and effort for fabricating these devices. In this study, we present a comprehensive finite element-based simulation of acoustic separation of platelets, red blood cells and white blood cells, using standing surface acoustic waves... 

    Modeling, simulation, and employing dilution–dialysis microfluidic chip (DDMC) for heightening proteins refolding efficiency

    , Article Bioprocess and Biosystems Engineering ; Volume 41, Issue 5 , 2018 , Pages 707-714 ; 16157591 (ISSN) Kashanian, F ; Masoudi, M. M ; Shamloo, A ; Habibi Rezaei, M ; Moosavi Movahedi, A. A ; Sharif University of Technology
    Springer Verlag  2018
    Abstract
    Miniaturized systems based on the principles of microfluidics are widely used in various fields, such as biochemical and biomedical applications. Systematic design processes are demanded the proper use of these microfluidic devices based on mathematical simulations. Aggregated proteins (e.g., inclusion bodies) in solution with chaotropic agents (such as urea) at high concentration in combination with reducing agents are denatured. Refolding methods to achieve the native proteins from inclusion bodies of recombinant protein relying on denaturant dilution or dialysis approaches for suppressing protein aggregation is very important in the industrial field. In this paper, a modeling approach is... 

    Microfluidic devices with gold thin film channels for chemical and biomedical applications: a review

    , Article Biomedical Microdevices ; Volume 21, Issue 4 , 2019 ; 13872176 (ISSN) Ghasemi Toudeshkchoui, M ; Rabiee, N ; Rabiee, M ; Bagherzadeh, M ; Tahriri, M ; Tayebi, L ; Hamblin, M. R ; Sharif University of Technology
    Springer New York LLC  2019
    Abstract
    Microfluidic systems (MFS) provide a range of advantages in biomedical applications, including improved controllability of material characteristics and lower consumption of reagents, energy, time and money. Fabrication of MFS employs various materials, such as glass, silicon, ceramics, paper, and metals such as gold, copper, aluminum, chromium and titanium. In this review, gold thin film microfluidic channels (GTFMFC) are discussed with reference to fabrication methods and their diverse use in chemical and biomedical applications. The advantages of gold thin films (GTF) include flexibility, ease of manufacture, adhesion to polymer surfaces, chemical stability, good electrical conductivity,... 

    Newtonian and generalized Newtonian reacting flows in serpentine microchannels: pressure driven and centrifugal microfluidics

    , Article Journal of Non-Newtonian Fluid Mechanics ; Volume 251 , January , 2018 , Pages 88-96 ; 03770257 (ISSN) Madadelahi, M ; Shamloo, A ; Sharif University of Technology
    Elsevier B.V  2018
    Abstract
    This paper presents a comprehensive 3D numerical simulation of reacting flows in micro scale dimension through centrifugal, or Lab-On-a-CD (LOCD), and pressure-driven, or Lab-On-a-Chip (LOC) devices. Three different serpentine channel configurations (rectangular, triangular and sinusoidal) are investigated. In these configurations, two chemical species enter from two inlets and according to an irreversible chemical reaction, start yielding other species. Both Newtonian and generalized Newtonian fluids are considered in the simulations and the results are compared for both LOC and LOCD devices. Besides, the effects of different parameters such as the aspect ratio of channels’ cross section,... 

    A tool for designing tree-like concentration gradient generators for lab-on-a-chip applications

    , Article Chemical Engineering Science ; Volume 212 , 2020 Ebadi, M ; Moshksayan, K ; Kashaninejad, N ; Saidi, M. S ; Nguyen, N. T ; Sharif University of Technology
    Elsevier Ltd  2020
    Abstract
    Concentration gradient generators (CGGs) help biologists to perform large scale, fast and high-throughput experiments. This paper introduces a design tool called Tree-like Concentration gradient generator Design Tool (TCDT). The performance of this tool is validated both numerically and experimentally. Three CGGs were fabricated using three different fabrication methods and design parameters. The performance of these devices was examined using the measurement of fluorescent and dye intensity. The performance of the design tool for non-linear and multi-drug concentration gradient generations was investigated as well. In addition, a method was developed to investigate the multi-drug... 

    Microfluidic-based approaches in targeted cell/particle separation based on physical properties: fundamentals and applications

    , Article Small ; Volume 16, Issue 29 , 2020 Nasiri, R ; Shamloo, A ; Ahadian, S ; Amirifar, L ; Akbari, J ; Goudie, M. J ; Lee, K ; Ashammakhi, N ; Dokmeci, M. R ; Di Carlo, D ; Khademhosseini, A ; Sharif University of Technology
    Wiley-VCH Verlag  2020
    Abstract
    Cell separation is a key step in many biomedical research areas including biotechnology, cancer research, regenerative medicine, and drug discovery. While conventional cell sorting approaches have led to high-efficiency sorting by exploiting the cell's specific properties, microfluidics has shown great promise in cell separation by exploiting different physical principles and using different properties of the cells. In particular, label-free cell separation techniques are highly recommended to minimize cell damage and avoid costly and labor-intensive steps of labeling molecular signatures of cells. In general, microfluidic-based cell sorting approaches can separate cells using “intrinsic”... 

    Deriving an analytical model for hydro-magnetic micro flow controller

    , Article 6th International Conference on Nanochannels, Microchannels, and Minichannels, ICNMM2008, Darmstadt, 23 June 2008 through 25 June 2008 ; Issue PART B , June , 2008 , Pages 1139-1146 ; 0791848345 (ISBN); 9780791848340 (ISBN) Esmaily Moghadam, M ; Shafii, M. B ; ASME ; Sharif University of Technology
    2008
    Abstract
    Fluid control, namely pumping and valving, is a critical factor in the performance of micro-fluidic systems. In recent years a variety of micro-fluidic systems are developed for the purpose of miniaturizing fluid handling, and chemical analysis to develop Lab On a Chip (LOC) technology. The mentioned facts resulted in design and fabrication of a novel hydromagnetic flow controller. The idea behind this device is that magnetic particles, mixed and dispersed in a carrier liquid, can be accumulated in the form of a piston. Depending upon dragging speed of these pistons, which itself is a function of switching time, this device can be used to either increase (pumping) or decrease (valving) the...