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    Fabrication of Enzyme Biosensor for Heavy Metal Detection

    , M.Sc. Thesis Sharif University of Technology Jahangirzadeh, Mir Ali (Author) ; Borghei, Mehdi (Supervisor) ; Sabzi, Reza (Supervisor)
    Abstract
    In this project identification of heavy metals has been studied by using glucose oxidase enzyme. Measurement of heavy metals such as mercury (II) nitrate, lead (II) nitrate and cadmium nitrate are based on inhibitory of glucose oxidase enzyme. To do this, two modified electrodes has stabilized on a graphite electrode. Nanocomposite of single wall carbon nanotube with Nile Blue is foundation of the first working electrode. Biological component of the electrode is glucose oxidase enzyme that bovine serum albumin and glutaraldehyde are helping enzyme in immobilization and these materials cause enzyme to cross link with the foundation. This biosensor has great stability and suitable linear... 

    Experimental Studies on the Application of Biosensor for Detection of Toxic Compound

    , M.Sc. Thesis Sharif University of Technology Ghanavati, Mehdi (Author) ; Roosta Azad, Reza (Supervisor) ; Musavi, Abbas (Co-Advisor)
    Abstract
    In this research, an amperometric inhibition biosensor for the detection of cyanide has been fabricated by immobilization of the horseradish peroxidase (HRP) on the surface of glassy carbone electrode (GCE). Chitosan/acrylamide was applied for immobilization of HRP on the working electrode. All electrochemical measurement were carried out with three electrode: Ag/AgCl electrode as reference electrode, GCE as working electrode and platinium electrode as counter electrode which immersed in phosphate buffer solution. The amperometric measurement was done at an applied potential of -100 mV versus Ag/AgCl with a scan rate of 100 mV in the presence of hydroquinone as electron mediator and... 

    Optimization and Offering a kinetic Model for Enzymatic Hydrolysis of Cellulosic Materials in a Membrane Bio-reactor

    , M.Sc. Thesis Sharif University of Technology Kashefi, Saeed (Author) ; Soltanieh, Mohammad (Supervisor) ; Shaygan Salek, Jalaloddin (Co-Advisor)
    Abstract
    Regarding decreasing resources of fossil fuels and their increasing costs in addition to their environmental pollutions, today, producing bio fuels from wastes such as lignocellulosic materials is of great interest. A fundamental stage in conversion of lignocellulosic materials into bio fuels, such as bio ethanol, is the enzymatic hydrolysis of these materials to produce reducing sugars. Researches have shown high costs of this stage. Optimization of enzymatic hydrolysisconditions is a major step in economization of this process.In this work corn hull is used to produce glucose. Corn hull is a kind of lignocellulosic material that due to high carbohydrate content is used as substrate. Our... 

    Antioxidant Production from Rice Bran and Optimization of the Process

    , M.Sc. Thesis Sharif University of Technology Arab, Fatemeh (Author) ; Alemzadeh, Iran (Supervisor) ; Maghsoudi, Vida (Supervisor)
    Abstract
    An antioxidant is a molecule capable of preventing the oxidation of other molecules and neutralizing free radicals. Free radicals are the root cause for many human diseases.Rice bran is one of the most important co-products in the rice milling.In this research antioxidant activity of two Iranian rice bran varieties Fajr and Tarem, extracted by three different solvents (methanol, ethanol and ethyl acetate),determined at different time of extraction by measurement of total phenolic content, free radical scavenging, inhabitation of linoleic acid peroxidation and reducing power. The methanolic extract of Fajr rice bran produced strong results in antioxidant activity. The amount of Total... 

    Experimental Studies on the Application of Biosensors for Detection of Toxic Compounds

    , M.Sc. Thesis Sharif University of Technology Ghadiri, Mohammad (Author) ; Roosta Azad, Reza (Supervisor) ; Kariminia, Hamid Reza (Supervisor)
    Abstract
    In this project, quantification of sulfide ion was investigated based on peroxidase enzyme inhibition. The fungal peroxidase was obtained from the liquid culture of Coprinus cinereus NBRC 30628. Two different biosensing systems were suggested for sulfide ion measurement: (1) An amperometric inhibition peroxidase biosensor proposed for determination of sulfide by in situ bulk polymerization of acrylamide for immobilization of peroxidase on screen-printed carbon electrode. Measurements were performed using phosphate buffer solution as a supporting electrolyte in the presence of hydroquinone as a mediator. Identification method was based on reduction of generation current, caused by hydrolysis... 

    PhD Thesis in Electrical Engineering – Biomedical Engineering:Auditory "Change Detection" Analysis using Integrated Event-Related Potentials and fMRI in Chronic Tinnitus Subjects

    , Ph.D. Dissertation Sharif University of Technology Asadpour, Abdoreza (Author) ; Jahed, Mehran (Supervisor) ; Mahmoudian, Saeid (Co-Supervisor)
    Abstract
    Tinnitus is commonly referred to the symptom of “ringing in the ear”, and it is scientifically described as the perception of sound in the absence of an acoustic event. This symptom is powerful enough to negatively affect sleep patterns and concentration. The symptoms affect more than forty-five million people only in the US and 10 to 20% of the world population. Management and treatment of subjective tinnitus is an ongoing focus of research activities. Ample evidence suggests that the mechanism of tinnitus involves maladaptive plasticity in both classic and non-classic auditory pathway. The non-classical pathway is referred to multi-modal sensory inputs to the auditory system, limbic... 

    Design and Computational Evaluation of Sugar-Amino Acid Conjugates as CK2α Inhibitor

    , M.Sc. Thesis Sharif University of Technology Nonanal Nahr, Milad (Author) ; Fattahi, Alireza (Supervisor)
    Abstract
    The aim of this study is to devise innovative compounds that impede the function of CK2α enzyme by incorporating amino acids and sugars into their molecular structure. CK2α, a catalytic subunit of CK2 enzyme, operates autonomously and is the only continuously active kinase that does not require an upstream regulator. Emerging evidence highlights CK2α's crucial role in various cancers and infectious diseases, including Covid-19, indicating that suppressing its function could provide a promising approach to improve patient outcomes. To accomplish this objective, the drug design process must take into account both pharmacokinetic and pharmacodynamic properties. Pharmacokinetics, encompassing... 

    Investigation of Novel Bioorthogonal Chemical Reactions on Proteins and Amyloid Formation

    , M.Sc. Thesis Sharif University of Technology Rezaei, Mohsen (Author) ; Kalhor, Hamid Reza (Supervisor)
    Abstract
    Bioorthogonal chemistry defines any reaction, inside or outside the living systems, without interfering with native chemical processes and 3dimensional structure of proteins. In these types of reactions water is the sole solvent; a neutral pH is required; the temperature must be up to 40 oC. The kinetics of reactions must be on the hour scale and the nontoxic reagents with low concentration must be used. One of the simplest methods of visualizing protein molecule is covalent attachment of fluorescein to protein. In this work several fluorescent compounds were synthesized. These novel compounds include acylchloride fluorescein, N-hydroxysuccinimide fluorescein, thiophenol fluorescein, and... 

    Some investigations on protease enzyme production kinetics using bacillus licheniformis BBRC 100053 and effects of inhibitors on protease activity

    , Article International Journal of Chemical Engineering ; 2014 ; ISSN: 1687806X Ghobadi Nejad, Z ; Yaghmaei, S ; Moghadam, N ; Sadeghein, B ; Sharif University of Technology
    Abstract
    Due to great commercial application of protease, it is necessary to study kinetic characterization of this enzyme in order to improve design of enzymatic reactors. In this study, mathematical modeling of protease enzyme production kinetics which is derived from Bacillus licheniformis BBRC 100053 was studied (at 37°C, pH 10 after 73 h in stationary phase, and 150 rpm). The aim of the present paper was to determine the best kinetic model and kinetic parameters for production of protease and calculating K i (inhibition constant) of different inhibitors to find the most effective one. The kinetic parameters K m (Michaelis-Menten constant) and V m (maximum rate) were calculated 0.626 mM and... 

    Study of the alloying additives and alkaline zincate solution effects on the commercial aluminum as galvanic anode for use in alkaline batteries

    , Article Materials Chemistry and Physics ; Volume 143, Issue 1 , 2013 , Pages 133-142 ; ISSN: 02540584 Rashvand Avei, M ; Jafarian, M ; Moghanni Bavil Olyaei, H ; Gobal, F ; Hosseini, S. M ; Mahjani, M. G ; Sharif University of Technology
    2013
    Abstract
    The corrosion behavior of different grades of commercial aluminum such as AA1040, AA5083, AA6060 and AA7075 in ZnO-containing 4 M NaOH has been determined by using open circuit potential-time measurements (OCP), galvanostatic and potentiodynamic polarization and electrochemical impedance spectroscopy (EIS). The results of scanning electron microscopy (SEM) and energy dispersive analysis of X-ray (EDAX) reveal that ZnO produces the inhibition effect by the formation of a zinc-containing deposit layer on the surface of aluminum electrodes. Although the influence of zincating on the performance of aluminum alloys and considering the amount of alloying elements such as zinc, magnesium and... 

    Modeling the kinetics of asphaltene flocculation in toluene-pentane systems for the case of sonicated crude oils

    , Article Scientia Iranica ; Volume 20, Issue 3 , June , 2013 , Pages 611-616 ; 10263098 (ISSN) Rad, M. H ; Tavakolian, M ; Najafi, I ; Ghazanfari, M. H ; Taghikhania, V ; Amani, M ; Sharif University of Technology
    2013
    Abstract
    This work is concerned with the monitoring of ultrasound effects on inhibition, as well as the reversible kinetics modeling of asphaltene flocculation in toluene-n-alkane systems, which has been rarely reported in the literature. A crude oil sample was exposed to ultrasound waves, and then the colloidal structural evolutions of flocculated asphaltene particles induced by addition of n-alkane were studied, using a confocal microscopy. Observations confirmed that radiation of ultrasound can change the irreversibility of asphaltene flocculation in crude oil. To interpret the kinetics of asphaltene flock aggregation, the Smoluchowski model was used, and the time dependent size distribution of... 

    Spectrophotometric determination of sulfide based on peroxidase inhibition by detection of purpurogallin formation

    , Article Ecotoxicology and Environmental Safety ; Volume 91 , 2013 , Pages 117-121 ; 01476513 (ISSN) Ghadiri, M ; Kariminia, H. R ; Roosta Azad, R ; Sharif University of Technology
    2013
    Abstract
    This paper presents a new method for spectrophotometirc detection of sulfide applying fungal peroxidase immobilized on sodium alginate. The sensing scheme was based on decrease of the absorbance of the orange compound, purpurogallin produced from pyrogallol and H2O2 as substrates, due to the inhibition of peroxidase by sulfide. Absorbance of purpurogallin was detected at 420nm by using a spectrophotometer. The proposed method could successfully detect the sulfide in the concentration range of 0.6-7.0μM with a detection limit of 0.4μM. The kinetic parameters of Michaelis-Menten with and without sulfide were also calculated. Possible inhibition mechanism of peroxidase by sulfide was deduced... 

    Physiological temperature has a crucial role in amyloid beta in the absence and presence of hydrophobic and hydrophilic nanoparticles

    , Article ACS Chemical Neuroscience ; Volume 4, Issue 3 , December , 2013 , Pages 375-378 ; 19487193 (ISSN) Ghavami, M ; Rezaei, M ; Ejtehadi, R ; Lotfi, M ; Shokrgozar, M. A ; Abd Emamy, B ; Raush, J ; Mahmoudi, M ; Sharif University of Technology
    2013
    Abstract
    Amyloid beta fibrillation can lead to major disorder of neurons processes and is associated with several neuronal diseases (e.g., Alzheimer's disease). We report here an importance of slight temperature changes, in the physiological range (35-42 °C), on the amyloid fibrillation process in the presence and absence of hydrophilic (silica) and hydrophobic (polystyrene) nanoparticles (NPs). The results highlight the fact that slight increases in temperature can induce inhibitory and acceleratory effects of hydrophobic and hydrophilic NPs on the fibrillation process, respectively. Using further in vivo considerations, the outcomes of this study can be used for considerable modifications on the... 

    The agglomeration kinetics of aluminum hydroxide in Bayer process

    , Article Powder Technology ; Volume 224 , July , 2012 , Pages 351-355 ; 00325910 (ISSN) Bahrami, M ; Nattaghi, E ; Movahedirad, S ; Ranjbarian, S ; Farhadi, F ; Sharif University of Technology
    2012
    Abstract
    The effects of temperature, seed mass and agitation rate on agglomeration kinetics of aluminum hydroxide in Bayer process have been studied in a batch system. Collected raw data were analyzed and the kinetics data of agglomeration were derived through simulation of the process using a pre-developed software. The results showed that agglomeration kinetics constant (agglomeration kernel) increases with increase in temperature and agitation rate. Moreover a maximum value of agglomeration rate versus added seed mass was observed. Furthermore the magnitude of calculated activation energy of agglomeration was close to that of growth  

    Amperometric sulfide detection using Coprinus cinereus peroxidase immobilized on screen printed electrode in an enzyme inhibition based biosensor

    , Article Biosensors and Bioelectronics ; Volume 35, Issue 1 , 2012 , Pages 297-301 ; 09565663 (ISSN) Savizi, I. S. P ; Kariminia, H. R ; Ghadiri, M ; Roosta Azad, R ; Sharif University of Technology
    2012
    Abstract
    In the present work, an amperometric inhibition biosensor for the determination of sulfide has been fabricated by immobilizing Coprinus cinereus peroxidase (CIP) on the surface of screen printed electrode (SPE). Chitosan/acrylamide was applied for immobilization of peroxidase on the working electrode. The amperometric measurement was performed at an applied potential of -150. mV versus Ag/AgCl with a scan rate of 100. mV in the presence of hydroquinone as electron mediator and 0.1. M phosphate buffer solution of pH 6.5. The variables influencing the performance of sensor including the amount of substrate, mediator concentration and electrolyte pH were optimized. The determination of sulfide... 

    Escherichia coli bacteria reduce graphene oxide to bactericidal graphene in a self-limiting manner

    , Article Carbon ; Volume 50, Issue 5 , 2012 , Pages 1853-1860 ; 00086223 (ISSN) Akhavan, O ; Ghaderi, E ; Sharif University of Technology
    2012
    Abstract
    Interactions of chemically exfoliated graphene oxide (GO) nanosheets and Escherichia coli bacteria living in mixed-acid fermentation with an anaerobic condition were investigated for different exposure times. X-ray photoelectron spectroscopy showed that as the exposure time increased (from 0 to 48 h), the oxygen-containing functional groups of the GO decreased by ∼60%, indicating a relative chemical reduction of the sheets by interaction with the bacteria. Raman spectroscopy and current-voltage measurement confirmed the reduction of the GO exposed to the bacteria. The reduction was believed to be due to the metabolic activity of the surviving bacteria through their glycolysis process. It was... 

    Application of ultrasonic wave technology as an asphaltene flocculation inhibition method

    , Article Saint Petersburg 2012 - Geosciences: Making the Most of the Earth's Resources ; 2012 Najafi, I ; Amani, M ; Mousavi, M. R ; Ghazanfari, M. H ; Sharif University of Technology
    Abstract
    Based on series of crude oil rheological properties and asphaltene flocculation confocal microscopy analysis, Najafi et al., (2011) reported the existence of an optimum radiation time at which asphaltenic crude oils reach the minimum kinematic viscosity. Accordingly, they proposed the idea of asphaltene flocculation inhibition due to wave radiation.The present investigation is a continuous effort to provide more information about the process of flocculation inhibition. Confocal microscopy and rheological analyses are performed on different crude oils to prove the repeatability of the observed phenomena. The asphaltene content analysis was done based on IP143 procedure, which provides more... 

    Copper corrosion in sodium dodecyl sulphate solutions and carbon nanotube nanofluids: A modified Koutecky-Levich equation to model the agitation effect

    , Article Corrosion Science ; Volume 53, Issue 12 , December , 2011 , Pages 4241-4247 ; 0010938X (ISSN) Baghalha, M ; Kamal Ahmadi, M ; Sharif University of Technology
    2011
    Abstract
    Copper corrosion in sodium dodecyl sulphate (SDS) solutions and carbon nanotube (CNT) nanofluids were studied by potentiodynamic polarization. For the corrosion current densities calculations, Koutecky-Levich equation was modified to model the combined charge and mass transport. 0.005. M SDS reduced the copper corrosion current density by 81%. Higher SDS concentrations enhanced corrosion. Stirring SDS solutions increased the corrosion current density by ∼75%. By adding CNT to SDS solution, the corrosion current density first decreased and then remained constant. Stirring CNT nanofluids didn't change the corrosion current density. An adsorbed CNT layer on copper controlled the corrosion... 

    A study of Acidithiobacillus Ferrooxidans DSMZ 583 Adaptation to Heavy Metals

    , Article Iranian Journal of Biotechnology ; Volume 9, Issue 2 , 2011 , Pages 133-144 ; 17283043 (ISSN) Yaghmaei, S ; Ghobadi, Z ; Sharif University of Technology
    2011
    Abstract
    In this study the ability of Acidithiobacillus ferrooxi-dans, with regard to the biorecovery of heavy metals in shake flask has been investigated. Adaptation experiments with the single metal ions Ni, Co, V, Mo, W and a mixture of the first four metal ions in the medium was developed through serial sub-culturing. Adaptation showed that A. ferrooxidans could tolerate up to 2.3 g/l Ni, 1.4 g/l Co, 1.4 g/l V, 0.045 g/l Mo and 0.005 g/l W, singly. In the presence of multi-metals considering a mixture of Ni-Co-V-Mo, the bacteria was able to tolerate up to 1.5 g/l Ni, 0.8 g/l Co, 0.8 g/l V and 0.05 g/l Mo in steps of 50-100 mg/l for Ni, Co and V, while for Mo and W with increments in concentration... 

    Antibacterial silver nanoparticles in polyvinyl alcohol/sodium alginate blend produced by gamma irradiation

    , Article International Journal of Biological Macromolecules ; Volume 80 , 2015 , Pages 170-176 ; 01418130 (ISSN) Eghbalifam, N ; Frounchi, M ; Dadbin, S ; Sharif University of Technology
    Abstract
    Polyvinyl alcohol/sodium alginate/nano silver (PVA/SA/Ag) composite films were made by solution casting method. Gamma irradiation was used to synthesize silver nanoparticles in situ via reduction of silver nitrate without using harmful chemical agents for biomedical applications. UV-vis and XRD results demonstrated that spherical silver nanoparticles were produced even at low irradiation dose of 5. kGy. By increasing irradiation dose, more nanoparticles were synthesized while no PVA hydrogel was formed up to 15. kGy. Also the size of nanoparticles was reduced with increasing gamma dose evidenced by higher release rate of silver nanoparticles in lukewarm water and SEM images. Comparing SEM...