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    Design and Fabrication of Micro-Fluidic Chip for Formation, Culture and Analysis of Cancer Tumor Cell Spheroids

    , M.Sc. Thesis Sharif University of Technology Khoshravesh, Hirad (Author) ; Saeedi, Mohammad Saeed (Supervisor) ; Kazemzadeh Hannani, Siamak (Co-Supervisor)
    Abstract
    Simulating the in-vivo environment of cancer tumors outside the body, can provide an appropriate condition for studying different key processes of the tumor micro-environment, such as aggregation, formation, growth, angiogenesis and metastasis of the cancer tumor cells, which can be useful in finding methods to cure, or at least control cancer. Every year, a variety of drugs are being developed to overcome cancer, all of which need to be experimented. Although, these drugs are now experimented on animals, and some human volunteers, the reaction of different patients’ cancer cells to different drugs may differ with the experimented animals, or even with other people. So, there needs to be a... 

    Unified structure of basic UWB waveforms

    , Article IEEE Transactions on Circuits and Systems II: Express Briefs ; Volume 55, Issue 12 , 2008 , Pages 1304-1308 ; 15497747 (ISSN) Ghavami, M ; Amini, A ; Marvasti, F ; Sharif University of Technology
    2008
    Abstract
    In this brief, a generalized expression for the popular ultra wideband waveforms is derived. It is shown that all three waveforms used in ultra wideband (Gaussian, modified Hermite, and prolate spheroidal waveforms) fulfill the Sturm–Liouville differential equation. By using this unified structure, characteristics of the waveforms such as orthogonality, finite duration in time and frequency spectrum are explained. © 2008 IEEE  

    An Investigation into the Effect of Prestrain Temperature on the Static
    Recrystallization of low Carbon Steel

    , M.Sc. Thesis Sharif University of Technology Akbari, Edris (Author) ; karimi Taheri, Ali (Supervisor)
    Abstract
    In this project the effect of rolling temperature on mechanical properties and microstructure evolution of a low carbon steel was studied. The steel was rolled up to a nominal strain of 67% at three different temperatures consisted of room, blue brittleness, and subzero temperature. Micreohardnessand tensile tests were used to characterize the recrystallization kinetics. Optical and scanning electron microscopic examinations were carried out to evaluate the mechanical, grain size, and the kinetics of static recrystallization by the Avrami equation. The results indicated that the volume fraction of static recrystallization increases with the increase in annealing period. The Avrami exponent... 

    Prediction of necrotic core and hypoxic zone of multicellular spheroids in a microbioreactor with a U-shaped barrier

    , Article Micromachines ; Volume 9, Issue 3 , 2018 ; 2072666X (ISSN) Barisam, M ; Saidi, M. S ; Kashaninejad, N ; Nguyen, N. T ; Sharif University of Technology
    MDPI AG  2018
    Abstract
    Microfluidic devices have been widely used for biological and cellular studies. Microbioreactors for three-dimensional (3D) multicellular spheroid culture are now considered as the next generation in in vitro diagnostic tools. The feasibility of using 3D cell aggregates to form multicellular spheroids in a microbioreactor with U-shaped barriers has been demonstrated experimentally. A barrier array is an alternative to commonly used microwell traps. The present study investigates oxygen and glucose concentration distributions as key parameters in a U-shaped array microbioreactor using finite element simulation. The effect of spheroid diameter, inlet concentration and flow rate of the medium... 

    Enzymatic outside-in cross-linking enables single-step microcapsule production for high-throughput three-dimensional cell microaggregate formation

    , Article Materials Today Bio ; Volume 6 , 2020 Van Loo, B ; Salehi, S. S ; Henke, S ; Shamloo, A ; Kamperman, T ; Karperien, M ; Leijten, J ; Sharif University of Technology
    Elsevier B.V  2020
    Abstract
    Cell-laden hydrogel microcapsules enable the high-throughput production of cell aggregates, which are relevant for three-dimensional tissue engineering and drug screening applications. However, current microcapsule production strategies are limited by their throughput, multistep protocols, and limited amount of compatible biomaterials. We here present a single-step process for the controlled microfluidic production of single-core microcapsules using enzymatic outside-in cross-linking of tyramine-conjugated polymers. It was hypothesized that a physically, instead of the conventionally explored biochemically, controlled enzymatic cross-linking process would improve the reproducibility,... 

    Fabrication and characterization of low-cost, bead-free, durable and hydrophobic electrospun membrane for 3D cell culture

    , Article Biomedical Microdevices ; Volume 19, Issue 4 , 2017 ; 13872176 (ISSN) Moghadas, H ; Saidi, M. S ; Kashaninejad, N ; Kiyoumarsioskouei, A ; Trung Nguyen, N ; Sharif University of Technology
    Abstract
    This paper reports the fabrication of electrospun polydimethylsiloxane (PDMS) membranes/scaffolds that are suitable for three-dimensional (3D) cell culture. Through modification the ratio between PDMS and polymethylmethacrylate (PMMA) as carrier polymer, we report the possibility of increasing PDMS weight ratio of up to 6 for electrospinning. Increasing the PDMS content increases the fiber diameter, the pore size, and the hydrophobicity. To our best knowledge, this is the first report describing beads-free, durable and portable electrospun membrane with maximum content of PDMS suitable for cell culture applications. To show the proof-of-concept, we successfully cultured epithelial lung... 

    Simulation, Design, and Fabrication of a Droplet-Based Microfluidic Device to Study The Role of Tumor Microenvironment and Drug Effects on the Behavior of Multicellular Tumor Spheroids

    , Ph.D. Dissertation Sharif University of Technology Besanjideh, Mohsen (Author) ; Shamloo, Amir (Supervisor) ; Kazemzadeh Hannani, Siamak (Supervisor)
    Abstract
    Despite the extensive research conducted so far to treat cancer, this disease is still one of the main causes of death worldwide. The results of recent studies reveal the importance of the tumor microenvironment in the growth, proliferation, and invasion of the primary tumor. Most common models in cancer research, such as 2-dimensional in vitro models and xenografts, do not have sufficient ability to mimic the interaction of tumors with human stromal tissue. Therefore, the implementation of 3-dimensional in vitro models with the ability to replicate tumor microenvironments is essential. In this study, a microfluidic platform has been introduced to create parallel models of the tumor... 

    A New Method Based on Crystal Plasticity Finite Element to Predict the Formability of Steel Sheets with Spheroidal Cementites

    , Ph.D. Dissertation Sharif University of Technology Einolghozati, Mona (Author) ; Assempour, Ahmad (Supervisor)
    Abstract
    In this research, using the crystal plasticity finite element method, the effects of various microstructural features on behavior of spherical steel sheets have been investigated. The cementite phase ratio, the grain sizes of ferrite and cementite, and the percentage of residual pearlite in the steel structure due to incomplete annealing are the major microstructural parameters studied in this work. A grain generator software has been developed to generate ferrite grains as well as cementite particles distributed in the ferrite matrix. A hard coating with special properties as an intermediate layer around the cementite grains has been considered to simulate the contact between ferrite grains... 

    Solution of diffusion equation in deformable spheroids

    , Article Annals of Nuclear Energy ; Volume 38, Issue 5 , 2011 , Pages 982-988 ; 03064549 (ISSN) Ayyoubzadeh, S. M ; Safari, M. J ; Vosoughi, N ; Sharif University of Technology
    2011
    Abstract
    The time-dependent diffusion of neutrons in a spheroid as a function of the focal distance has been studied. The solution is based on an orthogonal basis and an extrapolation distanced related boundary condition for the spheroidal geometry. It has been shown that spheres and disks are two limiting cases for the spheroids, for which there is a smooth transition for the systems properties between these two limits. Furthermore, it is demonstrated that a slight deformation from a sphere does not affect the fundamental mode properties, to the first order. The calculations for both multiplying and non-multiplying media have been undertaken, showing good agreement with direct Monte Carlo... 

    Numerical simulation of the behavior of toroidal and spheroidal multicellular aggregates in microfluidic devices with microwell and U-shaped barrier

    , Article Micromachines ; Volume 8, Issue 12 , 2017 ; 2072666X (ISSN) Barisam, M ; Saidi, M. S ; Kashaninejad, N ; Vadivelu, R ; Nguyen, N. T ; Sharif University of Technology
    Abstract
    A microfluidic system provides an excellent platform for cellular studies. Most importantly, a three-dimensional (3D) cell culture model reconstructs more accurately the in vivo microenvironment of tissue. Accordingly, microfluidic 3D cell culture devices could be ideal candidates for in vitro cell culture platforms. In this paper, two types of 3D cellular aggregates, i.e., toroid and spheroid, are numerically studied. The studies are carried out for microfluidic systems containing U-shaped barrier as well as microwell structure. For the first time, we obtain oxygen and glucose concentration distributions inside a toroid aggregate as well as the shear stress on its surface and compare its... 

    Spheroids-on-a-chip: recent advances and design considerations in microfluidic platforms for spheroid formation and culture

    , Article Sensors and Actuators, B: Chemical ; Volume 263 , 15 June , 2018 , Pages 151-176 ; 09254005 (ISSN) Moshksayan, K ; Kashaninejad, N ; Ebrahimi Warkiani, M ; Lock, J. G ; Moghadas, H ; Firoozabadi, B ; Saidi, M. S ; Nguyen, N. T ; Sharif University of Technology
    Elsevier B.V  2018
    Abstract
    A cell spheroid is a three-dimensional (3D) aggregation of cells. Synthetic, in-vitro spheroids provide similar metabolism, proliferation, and species concentration gradients to those found in-vivo. For instance, cancer cell spheroids have been demonstrated to mimic in-vivo tumor microenvironments, and are thus suitable for in-vitro drug screening. The first part of this paper discusses the latest microfluidic designs for spheroid formation and culture, comparing their strategies and efficacy. The most recent microfluidic techniques for spheroid formation utilize emulsion, microwells, U-shaped microstructures, or digital microfluidics. The engineering aspects underpinning spheroid formation... 

    Numerical investigations of hepatic spheroids metabolic reactions in a perfusion bioreactor

    , Article Frontiers in Bioengineering and Biotechnology ; Volume 7 , 2019 ; 22964185 (ISSN) Sharifi, F ; Firoozabadi, B ; Firoozbakhsh, K ; Sharif University of Technology
    Frontiers Media S.A  2019
    Abstract
    Miniaturized culture systems of hepatic cells are emerging as a strong tool facilitating studies related to liver diseases and drug discovery. However, the experimental optimization of various parameters involved in the operation of these systems is time-consuming and expensive. Hence, developing numerical tools predicting the function of such systems can significantly reduce the associated cost. In this paper, a perfusion-based three dimensional (3D) bioreactor comprising encapsulated human liver hepatocellular carcinoma (HepG2) spheroids are analyzed. The flow and mass transfer equations for oxygen as well as different metabolites such as albumin, glucose, glutamine, ammonia, and urea were... 

    Engineering 3D parallelized microfluidic droplet generators with equal flow profiles by computational fluid dynamics and stereolithographic printing

    , Article Lab on a Chip ; Volume 20, Issue 3 , 2020 , Pages 490-495 Kamperman, T ; Teixeira, L. M ; Salehi, S. S ; Kerckhofs, G ; Guyot, Y ; Geven, M ; Geris, L ; Grijpma, D ; Blanquer, S ; Leijten, J ; Sharif University of Technology
    Royal Society of Chemistry  2020
    Abstract
    Microfluidic droplet generators excel in generating monodisperse micrometer-sized droplets and particles. However, the low throughput of conventional droplet generators hinders their clinical and industrial translation. Current approaches to parallelize microdevices are challenged by the two-dimensional nature of the standard fabrication methods. Here, we report the facile production of three-dimensionally (3D) parallelized microfluidic droplet generators consisting of stacked and radially multiplexed channel designs. Computational fluid dynamics simulations form the design basis for a microflow distributor that ensures similar flow rates through all droplet generators. Stereolithography is... 

    Design and Fabrication of a Microfluidic Chip for Three-dimensional Cancer Cell Culture

    , M.Sc. Thesis Sharif University of Technology Moshksayan, Khashayar (Author) ; Saeedi, Mohammad Saeed (Supervisor) ; Kashaninejad, Navid (Co-Advisor)
    Abstract
    Nowadays, we are witnesses of deaths caused by cancer in large statistical amounts. Vast number of investigations are conducted for anticancer drug evaluation on human and animal cells using traditional two-dimensional and three-dimensional culturing platforms. However, most of them are not successful due to the lack of in-vivo relevant microenvironment in these platforms. One of the best cancer in-vitro cultures is the tumor spheroid which is a spherical cellular aggregation. By culturing these tumor spheroids in a microfluidic chip, it is possible to mimic the in-vivo microenvironment elements such as nutrient and metabolite gradients. Here we present a microfluidic device fabricated using... 

    3d Design of a Microfluidic Chip for Anticancer Drugs Screening

    , M.Sc. Thesis Sharif University of Technology Hashemi, Maryam Sadat (Author) ; Mashayekhan, Shohreh (Supervisor) ; Saadatmand, Maryam (Supervisor)
    Abstract
    Nowadays, advanced and inexpensive pre-clinical methods for investigating the effects of anti-cancer drugs are expanding. One of the latest three-dimensional laboratory modeling for evaluating the effects of drugs is the use of tumor-on-chip technology, which actually models the physiological system of the body through three-dimensional scaffolds, multicellular cultures, and shaped vascular systems. In this study, three-dimensional culture of cancer cells was performed in the form of spheroids. A chip of U-shaped microstructures with and without gaps was used to trap cells and form cancer spheroids. We simulated the simultaneous effect of drug and oxygen concentration distribution inside the... 

    Organ-tumor-on-a-chip for chemosensitivity assay: A critical review

    , Article Micromachines ; Volume 7, Issue 8 , 2016 ; 2072666X (ISSN) Kashaninejad, N ; Nikmaneshi, M. R ; Moghadas, H ; Kiyoumarsi Oskouei, A ; Rismanian, M ; Barisam, M ; Saidi, M. S ; Firoozabadi, B ; Sharif University of Technology
    MDPI AG  2016
    Abstract
    With a mortality rate over 580,000 per year, cancer is still one of the leading causes of death worldwide. However, the emerging field of microfluidics can potentially shed light on this puzzling disease. Unique characteristics of microfluidic chips (also known as micro-total analysis system) make them excellent candidates for biological applications. The ex vivo approach of tumor-on-a-chip is becoming an indispensable part of personalized medicine and can replace in vivo animal testing as well as conventional in vitro methods. In tumor-on-a-chip, the complex three-dimensional (3D) nature of malignant tumor is co-cultured on a microfluidic chip and high throughput screening tools to evaluate... 

    Microfluidic technologies to engineer mesenchymal stem cell aggregates—applications and benefits

    , Article Biophysical Reviews ; Volume 12, Issue 1 , 2020 , Pages 123-133 Salehi, S. S ; Shamloo, A ; Kazemzadeh Hannani, S. K ; Sharif University of Technology
    Springer  2020
    Abstract
    Three-dimensional cell culture and the forming multicellular aggregates are superior over traditional monolayer approaches due to better mimicking of in vivo conditions and hence functions of a tissue. A considerable amount of attention has been devoted to devising efficient methods for the rapid formation of uniform-sized multicellular aggregates. Microfluidic technology describes a platform of techniques comprising microchannels to manipulate the small number of reagents with unique properties and capabilities suitable for biological studies. The focus of this review is to highlight recent studies of using microfluidics, especially droplet-based types for the formation, culture, and... 

    Piezoelectric composites with periodic multi-coated inhomogeneities

    , Article International Journal of Solids and Structures ; Volume 47, Issue 21 , October , 2010 , Pages 2893-2904 ; 00207683 (ISSN) Hashemi, R ; Weng, G. J ; Kargarnovin, M. H ; Shodja, H. M ; Sharif University of Technology
    Abstract
    A new, robust homogenization scheme for determination of the effective properties of a periodic piezoelectric composite with general multi-coated inhomogeneities is developed. In this scheme the coating does not have to be thin, the shape and orientation of the inclusion and coatings do not have to be identical, their centers do not have to coincide, their properties do not have to remain uniform, and the microstructure can be with the 2D elliptic or the 3D ellipsoidal inclusions. The development starts from the local electromechanical equivalent inclusion principle through the introduction of the position-dependent equivalent eigenstrain and electric field. Then with a Fourier series... 

    Electron trajectory evaluation in laser-plasma interaction for effective output beam

    , Article Chinese Physics B ; Volume 19, Issue 6 , 2010 ; 16741056 (ISSN) Zobdeh, P ; Sadighi Bonabi, R ; Afarideh, H ; Sharif University of Technology
    2010
    Abstract
    Using the ellipsoidal cavity model, the quasi-monoenergetic electron output beam in laser-plasma interaction is described. By the cavity regime the quality of electron beam is improved in comparison with those generated from other methods such as periodic plasma wave field, spheroidal cavity regime and plasma channel guided acceleration. Trajectory of electron motion is described as hyperbolic, parabolic or elliptic paths. We find that the self-generated electron bunch has a smaller energy width and more effective gain in energy spectrum. Initial condition for the ellipsoidal cavity is determined by laser-plasma parameters. The electron trajectory is influenced by its position, energy and... 

    Distinct dynamics of migratory response to pd-1 and ctla-4 blockade reveals new mechanistic insights for potential t-cell reinvigoration following immune checkpoint blockade

    , Article Cells ; Volume 11, Issue 22 , 2022 ; 20734409 (ISSN) Safaeifard, F ; Goliaei, B ; Aref, A. R ; Foroughmand-Araabi, M. H ; Goliaei, S ; Lorch, J ; Jenkins, R. W ; Barbie, D. A ; Shariatpanahi, S. P ; Rüegg, C ; Sharif University of Technology
    MDPI  2022
    Abstract
    Cytotoxic T-lymphocyte-associated antigen 4 (CTLA-4) and programmed cell death protein 1 (PD-1), two clinically relevant targets for the immunotherapy of cancer, are negative regulators of T-cell activation and migration. Optimizing the therapeutic response to CTLA-4 and PD-1 blockade calls for a more comprehensive insight into the coordinated function of these immune regulators. Mathematical modeling can be used to elucidate nonlinear tumor–immune interactions and highlight the underlying mechanisms to tackle the problem. Here, we investigated and statistically characterized the dynamics of T-cell migration as a measure of the functional response to these pathways. We used a previously...