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    A life clustering framework for prognostics of gas turbine engines under limited data situations

    , Article International Journal of Engineering Transactions C: Aspects ; Volume 34, Issue 3 , 2021 , Pages 728-736 ; 24237167 (ISSN) Mahmoodian, A ; Durali, M ; Saadat, M ; Abbasian, T ; Sharif University of Technology
    Materials and Energy Research Center  2021
    Abstract
    The reliability of data driven prognostics algorithms severely depends on the volume of data. Therefore in case of limited data availability, life estimations usually are not acceptable; because the quantity of run to failure data is not sufficient to train prognostics model efficiently. To board this problem, a life clustering prognostics (LCP) framework is proposed. LCP regenerates the train data at different ages and outcomes to increment of the training data volume. So, the method is useful for limited data conditions. In this research, initially LCP performance is studied in normal situation is; successively robustness of the framework under limited data conditions is considered. For... 

    Experimental study of rolling element bearing failure pattern based on vibration growth process

    , Article Proceedings of the 29th European Safety and Reliability Conference, ESREL 2019, 22 September 2019 through 26 September 2019 ; 2020 , Pages 1179-1186 Hosseini Yazdi, M ; Behzad, M ; Ghodrati, B ; Taghizadeh Vahed, A ; Sharif University of Technology
    Research Publishing Services  2020
    Abstract
    Rolling-element bearing (REB) Failure is one of the most common failure in rotary machines in industry. Therefore, this concern draws attention to the concept of diagnostic and the prediction of REB failure. The efficacy of vibration analysis in this area has led many researchers to focus on this topic in recent decades. Defective bearings such as fatigue, surface roughness, and corrosion can lead to disastrous accidents. Therefore, providing an algorithm for the detection and classification of bearing defects is valuable and useful. The prediction of the bearing's lifetime is important to ensure the planned production in an industrial unit. In this paper, different models for performance... 

    A large dataset of white blood cells containing cell locations and types, along with segmented nuclei and cytoplasm

    , Article Scientific Reports ; Volume 12, Issue 1 , 2022 ; 20452322 (ISSN) Kouzehkanan, Z. M ; Saghari, S ; Tavakoli, S ; Rostami, P ; Abaszadeh, M ; Mirzadeh, F ; Satlsar, E. S ; Gheidishahran, M ; Gorgi, F ; Mohammadi, S ; Hosseini, R ; Sharif University of Technology
    Nature Research  2022
    Abstract
    Accurate and early detection of anomalies in peripheral white blood cells plays a crucial role in the evaluation of well-being in individuals and the diagnosis and prognosis of hematologic diseases. For example, some blood disorders and immune system-related diseases are diagnosed by the differential count of white blood cells, which is one of the common laboratory tests. Data is one of the most important ingredients in the development and testing of many commercial and successful automatic or semi-automatic systems. To this end, this study introduces a free access dataset of normal peripheral white blood cells called Raabin-WBC containing about 40,000 images of white blood cells and color... 

    Cytochrome 4z1 expression is correlated with poor prognosis in patients with cervical cancer

    , Article Current Oncology ; Volume 28, Issue 5 , 2021 , Pages 3573-3584 ; 17187729 (ISSN) Al-Saraireh, Y. M ; Alshammari, F. O. F. O ; Youssef, A. M. M ; Al Sarayra, Y. M ; Al Saraireh, R. A ; Al Muhaisen, G. H ; Al Mahdy, Y. S ; Al Kharabsheh, A. M ; Abufraijeh, S. M ; Al Rawashdeh, H. M ; Sharif University of Technology
    MDPI  2021
    Abstract
    Background: cervical cancer is one of the most common malignancies in women worldwide and its management remains challenging and complex. As Cytochrome4Z1 (CYP4Z1) is overex-pressed in many tumours, its expression in cervical cancer is unknown. Therefore, the present study aimed to evaluate CYP4Z1 expression in cervical cancers. Methods: CYP4Z1 expression was immunohistochemically assessed in 100 cases of cervical cancers along with ten normal cervix tissues, and the enzyme’s relationship to several clinicopathological features and survival was explored. Results: CYP4Z1 was strongly expressed in 55% of cervical cancer patients. Normal cervix samples were negative for CYP4Z1 expression.... 

    Design and fabrication of a novel microfluidic system for enrichment of circulating tumor cells with the assistance of computer simulations

    , Article Avicenna Journal of Medical Biotechnology ; Volume 11, Issue 4 , 2019 , Pages 277-284 ; 20082835 (ISSN) Dorrigiv, D ; Vossoughi, M ; Alemzadeh, I ; Sharif University of Technology
    Avicenna Research Institute  2019
    Abstract
    Background: Cancer is the first cause of death in developed countries. The heterogeneous nature of cancer requires patient-specified treatment plans. One reliable approach is collecting Circulating Tumour Cells (CTCs) and using them for prognosis and drug response assessment purposes. CTCs are rare and their separation from normal cell requires high-accuracy methods. Methods: A microfluidic cell capture device to separate CTCs from peripheral blood is presented in this study. The CTC separation device applies hydrodynamic forces to categorize cells according to their sizes. The proposed device is designed and evaluated by numerical simulations and validated experimentally. The simulation... 

    Optical radiomic signatures derived from optical coherence tomography images improve identification of melanoma

    , Article Cancer Research ; Volume 79, Issue 8 , 2019 , Pages 2021-2030 ; 00085472 (ISSN) Turani, Z ; Fatemizadeh, E ; Blumetti, T ; Daveluy, S ; Moraes, A. F ; Chen, W ; Mehregan, D ; Andersen, P. E ; Nasiriavanaki, M ; Sharif University of Technology
    American Association for Cancer Research Inc  2019
    Abstract
    The current gold standard for clinical diagnosis of melanoma is excisional biopsy and histopathologic analysis. Approximately 15–30 benign lesions are biopsied to diagnose each melanoma. In addition, biopsies are invasive and result in pain, anxiety, scarring, and disfigurement of patients, which can add additional burden to the health care system. Among several imaging techniques developed to enhance melanoma diagnosis, optical coherence tomography (OCT), with its high-resolution and intermediate penetration depth, can potentially provide required diagnostic information noninvasively. Here, we present an image analysis algorithm, "optical properties extraction (OPE)," which improves the... 

    Cytochrome 4Z1 expression is associated with unfavorable survival in triple-negative breast cancers

    , Article Breast Cancer: Targets and Therapy ; Volume 13 , 2021 , Pages 565-574 ; 11791314 (ISSN) Al Saraireh, Y. M ; Alshammari, F. O. F. O ; Youssef, A. M. M ; Al Tarawneh, F ; Al Sarayreh, S ; Almuhaisen, G. H ; Satari, A. O ; Al Shuneigat, J ; Alrawashdeh, H. M ; Sharif University of Technology
    Dove Medical Press Ltd  2021
    Abstract
    Purpose: Triple-negative breast cancer (TNBC) is characterized by high mortality rate, and its clinical management is difficult and complex. Therefore, there is a need for extensive efforts aimed at accelerating the discovery of novel therapies for TNBC. CYP4Z1 has been implicated in the development of breast cancer. The current study aimed at characterizing the expression of CYP4Z1 on TNBC. Materials and Methods: Using immunohistochemistry, CYP4Z1 expression was evaluated on 122 TNBC samples, four samples of breast cancers expressing ER, PR, and HER-2, and four samples of normal breast tissues. The association between the enzyme and various histopathological features and survival of... 

    A full pipeline of diagnosis and prognosis the risk of chronic diseases using deep learning and Shapley values: The Ravansar county anthropometric cohort study

    , Article PLoS ONE ; Volume 17, Issue 1 January , 2022 ; 19326203 (ISSN) Jafari, H ; Shohaimi, S ; Salari, N ; Kiaei, A. A ; Najafi, F ; Khazaei, S ; Niaparast, M ; Abdollahi, A ; Mohammadi, M ; Sharif University of Technology
    Public Library of Science  2022
    Abstract
    Anthropometry is a Greek word that consists of the two words "Anthropo"meaning human species and "metery"meaning measurement. It is a science that deals with the size of the body including the dimensions of different parts, the field of motion and the strength of the muscles of the body. Specific individual dimensions such as heights, widths, depths, distances, environments and curvatures are usually measured. In this article, we investigate the anthropometric characteristics of patients with chronic diseases (diabetes, hypertension, cardiovascular disease, heart attacks and strokes) and find the factors affecting these diseases and the extent of the impact of each to make the necessary... 

    An expert system for selecting wart treatment method

    , Article Computers in Biology and Medicine ; Volume 81 , 2017 , Pages 167-175 ; 00104825 (ISSN) Khozeimeh, F ; Alizadehsani, R ; Roshanzamir, M ; Khosravi, A ; Layegh, P ; Nahavandi, S ; Sharif University of Technology
    Elsevier Ltd  2017
    Abstract
    As benign tumors, warts are made through the mediation of Human Papillomavirus (HPV) and may grow on all parts of body, especially hands and feet. There are several treatment methods for this illness. However, none of them can heal all patients. Consequently, physicians are looking for more effective and customized treatments for each patient. They are endeavoring to discover which treatments have better impacts on a particular patient. The aim of this study is to identify the appropriate treatment for two common types of warts (plantar and common) and to predict the responses of two of the best methods (immunotherapy and cryotherapy) to the treatment. As an original work, the study was... 

    Expression analysis of protein inhibitor of activated stat in inflammatory demyelinating polyradiculoneuropathy

    , Article Frontiers in Immunology ; Volume 12 , 2021 ; 16643224 (ISSN) Ghafouri Fard, S ; Hussen, B. M ; Nicknafs, F ; Nazer, N ; Sayad, A ; Taheri, M ; Sharif University of Technology
    Frontiers Media S.A  2021
    Abstract
    Protein inhibitors of activated STAT (PIAS) are involved in the regulation of the JAK/STAT signaling pathway and have interactions with NF-κB, p73 and p53. These proteins regulate immune responses; therefore dysregulation in their expression leads to several immune-mediated disorders. In the present study, we examined expression of PIAS1-4 in peripheral blood of patients with acute/chronic inflammatory demyelinating polyradiculoneuropathy (AIDP/CIDP) compared with healthy subjects. We demonstrated down-regulation of all PIAS genes in both AIDP and CIDP cases compared with controls. Similarly, comparisons in gender-based groups revealed down-regulation of these gene0s in patients of each... 

    The association of clinicopathological characterizations of colorectal cancer with membrane-bound mucins genes and LncRNAs

    , Article Pathology Research and Practice ; Volume 233 , 2022 ; 03440338 (ISSN) Iranmanesh, H ; Entezari, M ; Rejali, L ; Nazemalhosseini-Mojarad, E ; Maghsoudloo, M ; Asadzadeh Aghdaei, H ; Zali, M. R ; Hushmandi, K ; Rabiee, N ; Makvandi, P ; Ashrafizadeh, M ; Hashemi, M ; Sharif University of Technology
    Elsevier GmbH  2022
    Abstract
    Background: Colorectal cancer (CRC) is one of the most common malignancies in the world and has a high mortality rate. It is believed that dysfunction in the expression of mucins and aberrant expression of some lncRNAs are associated with the occurrence and development of CRC. Therefore, the aim of the present study was to investigate the expression of MUC15, MUC16, MUC20, PCAT1, CCAT1 and HOTAIR genes in colorectal cancer and its relationship with clinicopathological variables. Materials and methods: This research was prospective case-control study. Tumors from CRC patients were collected from the Taleghani Hospital, Shahid Beheshti University of Medical Sciences, Tehran, Iran. RNA... 

    Opposite trends of GAS6 and GAS6-AS expressions in breast cancer tissues

    , Article Experimental and Molecular Pathology ; Volume 118 , 2021 ; 00144800 (ISSN) Lavasani, A ; Hussen, B. M ; Taheri, F ; Sattari, A ; Yousefi, H ; Omrani, M. D ; Nazer, N ; Ghafouri Fard, S ; Taheri, M ; Sharif University of Technology
    Academic Press Inc  2021
    Abstract
    Growth arrest-specific gene 6 (GAS6) is a growth factor-like cytokine whose function is related with vitamin K. This protein interacts with receptor tyrosine kinase proteins such as Tyro3, Axl, and TAM Receptor family, therefore affecting the tumorigenic processes via different mechanisms. GAS6-antisense 1 (GAS6-AS1) is a long non-coding RNAs (lncRNAs) that is transcribed from a genomic regions nearby GAS6. This lncRNA is also implicated in the pathobiology of cancer. We intended to judge the role of GAS6 and GAS6-AS1 in the pathogenesis of breast cancer through appraisal of their expression levels in breast cancer tissues and their paired neighboring non-cancerous samples. Expression of...