Sharif Digital Repository

This study aims at investigation of the resonance frequencies of carbon nanopeapods constructed by a single wall carbon nanotube and encapsulated buckyball molecules (C60). A nanopeapod can be used as a nanoscale variable frequency beam resonator according to the number and positions of the encapsulated fullerenes. Using the molecular structural mechanics method the covalence bonds are simulated by equivalent beam elements and the van der Waal interactions between the buckyballs and nanotube are modeled as linear springs. Also, an equivalent beam model is proposed for the nanopeapod with sectional properties which are obtained by the molecular structural mechanics model. The beam-like modes... 

In this paper the classical molecular structural mechanics model of graphene is modified to improve its accuracy for the analysis of transverse deformations. To this aim, a sample graphene sheet under a uniform pressure is modeled by both molecular dynamics and molecular structural mechanics methods. The sectional properties of the beam element, by which the covalent bonds are modeled, are modified such that the difference between the results of the molecular mechanics model and molecular dynamics simulation is minimized. Using this modified model, the buckling behavior of graphene under a uniform edge pressure is investigated subjected to different boundary conditions for both zigzag and... 

This letter adopts an atomistic modeling approach to study free vibrational characteristics of C60, C70, and C80 fullerenes. In this regard, we use the molecular structural mechanics consisting of equivalent structural beams to calculate the nonzero natural frequencies. The simulation results indicate that the first natural frequency of the fullerene is in the order terahertz and decreases nonlinearly with respect to the number of the carbon atoms  

Molecular structural mechanics is implemented to model vibrational behavior of defect free single-layered graphene sheets (SLGSs) at constant temperature. To mimic these two-dimensional layers, zigzag and armchair models with cantilever and bridge boundary conditions are adopted. Fundamental frequencies of these nano structures are calculated, and it is perceived that they are independent of the chirality and aspect ratio. Effects of point mass and atomistic dust on the fundamental frequencies are also considered in order to investigate the possibility of using SLGSs as sensors. Results of exhibit the principle frequencies are highly sensitive to the added mass in the order of 10-6fg.... 

A highly efficient and simple synthesis of dithiocarbamates is possible based on the one-pot reaction of amines, CS2, and alkyl halides without using a catalyst under solvent-free conditions. The mild reaction conditions, high yields, and broad scope of the reaction illustrate the good synthetic utility of this method. The reaction is a highly atom-economic process for production of S-alkyl thiocarbamates and successfully can be used in high quantities in the pharmaceutical or agrochemical industries. © 2006 American Chemical Society  

N-1-naphthylphtalamic acid (naptalam) and its degradation products, 1-naphthylamine and N-(1-naphthyl) phthalimide were simultaneously determined in river water by two independent mass spectrometric (MS) methods. These were negative ion MS (NIMS) and programmable temperature vaporizer gas chromatography mass spectrometry (PTV-GC MS) with electron impact ionization (positive ions). Prior to the NIMS analysis, the samples were preconcentrated by solid phase extraction (SPE) of C18 membrane discs. The PTV-GC MS studies were performed without any preconcentration procedure. Selected ion monitoring (SIM) and internal standardization with naphthalene were applied in both methods. The limits of... 

In this research the radical chlorination reaction of polyethylene has been carried out in perchloroethylene solvent under atmospheric pressure, using chlorine gas and UV light. In order to characterize the structural configuration of chlorinated polymer and study the reaction rate, different samples have been taken in equal periods of time during the reaction time. The FT-IR and H NMR spectra of these samples have been recorded and interpreted. The sequences of methylene groups between two subsequent chloromethylene groups in the polymeric chains have been determined through H NMR spectra and the obtained results have been confirmed with the data of some model compounds. The relative... 

Rhenium distribution between Tri-n-butyl phosphate (TBP) dissolved in kerosene and sulfuric aqueous media is investigated under different temperatures, acidities, and TBP concentrations. Results show an exothermic extraction reaction with a distribution factor that decreases with the increase of the temperature and increases with the increase of the acidity and the TBP concentration. The stoichiometry of the reaction indicates neutralization of 1 mole of H+ with 1 mole of ReO4- and solvating of a neutral molecule with four molecules of TBP. The structure of the complexes formed is, therefore, 4TBP · HReO4. The apparent Gibbs free energy of the formation of 4TBP · HReO4 from TBP, ReO4-, and... 

Free electron laser (FEL) machines generate highpower, coherent, and tunable radiation in the X-ray range. They are used to study molecular structural and dynamic processes at the Ångstrom-femtosecond spatiotemporal scale. The Swiss Free Electron Laser (SwissFEL) facility-under development at the Paul Scherrer Institut and scheduled to begin operation in 2017- will generate intense and short pulses of X-ray light, enabling researchers to observe extremely fast processes, such as the creation of new molecules in chemical reactions or to study the detailed structure of proteins. This article introduces FEL technology from a control systems perspective and provides insight into the types of... 

The synthesis and structures of two new octadentate, Schiff-base calixpyrrole macrocycles are presented in which modifications at the meso-substituents (L1) or the aryl spacer between the two pyrrole-imine donor compartments (L2) are introduced. The outcomes of these changes are highlighted in the structures of binuclear Pacman complexes of these macrocycles, [M2(L1)] and [M2(L 2)]. Both palladium and cobalt complexes of the fluorenylmeso- substituted macrocycle H4L1 adopt rigid, but laterally twisted geometries with enclosed bimetallic microenvironments; a consequence of this spatial constraint is an exo-exo-bonding mode of pyridine in the dicobalt complex [Co2(py)2(L1)]. In contrast, the... 

Molecular structural mechanics is implemented to model vibrational behavior of defect free single-layered graphene sheets (SLGSs) at constant temperature. To mimic these two-dimensional layers, zigzag and armchair models with cantilever and bridge boundary conditions are adopted. Fundamental frequencies of these nano structures are calculated, and it is perceived that they are independent of the chirality and aspect ratio. Effects of point mass and atomistic dust on the fundamental frequencies are also considered in order to investigate the possibility of using SLGSs as sensors. Results of exhibit the principle frequencies are highly sensitive to the added mass in the order of 10-6 fg.... 

The absolute free energy of solvation of methane (CH4) and its fluorinated forms (CH3F, CH2F2, CHF3 and CF4) have been computed via statistical perturbation theory (SPT) in the NPT ensemble at four thermodynamical states (whitin liquid and supercritical regions), in the context of Monte Carlo Simulations. Thermodynamical interpretation of the observed trend in the absolute free energy of solvation in different states reveals an exothermic solvation with ΔSslv < 0 (entropically unfavorable solvation) that the intermolecular interactions play an important role in the solvation process. The fluorinated methanes are confirmed to control the mutual arrangement of neighboring CO2 molecules and the... 

Using restricted Hartree-Fock (RHF) and density functional theory (DFT) methods at gauge invariant atomic orbital (GIAO) condition, chemical shielding of 13C and 15N nuclei of imidazole and its 4-nitro derivative at different temperatures were calculated. Since we have used the realized structures determined by X-ray and neutron diffraction methods, accuracy of calculated results is improved. By partially optimization of structures of 4-nitroimidazole, determined by X-ray crystallography, the obtained results of these structures are also better than nonoptimized structures. Additionally, we have obtained an optimized geometry for hydrogen bond in structures mentioned above. © 2006 Elsevier... 

Ab initio quantum chemical calculations at the density functional theory (DFT) level were performed on eight pyridine derivative molecules as corrosion inhibitors for iron in an acidic solution. In this regard, the geometry of the molecules were optimized using the B3LYP/6-31G method first, and then interactions of these optimized structures with the iron atom were explored using the B3LYP/LANL1MB method. Two modes of adsorption were considered, i.e., planar adsorption (P) via the pyridine ring and vertical adsorption (V) through a nitrogen atom. The interaction energy was minimized through the variation of the inhibitor molecule-iron atom distance. These minimum energy values, along with... 

An extracting medium based on chitosan-polypyrrole (CS-PPy) magnetic nanocomposite was synthesized by chemical polymerization of pyrrole at the presence of chitosan magnetic nanoparticles (CS-MNPs) for micro-solid phase extraction. In this work, magnetic nanoparticles, the modified CS-MNPs and different types of CS-PPy magnetic nanocomposites were synthesized. Extraction efficiency of the CS-PPy magnetic nanocomposite was compared with the CS-MNPs and Fe3O4 nanoparticles for the determination of naproxen in aqueous samples, via quantification by spectrofluorimetry. The scanning electron microscopy images obtained from all the prepared nanocomposites revealed that the CS-PPy magnetic... 

The synthesis of a variety of 2,3-disubstituted quinolines has been achieved successfully via a one-pot three-component reaction of arylamines, arylaldehydes and aliphatic aldehydes in the presence of butylpyridinium tetrachloroindate(III), [bpy][InCl4], ionic liquid as a green catalyst and solvent. Mild conditions with excellent conversions, and simple product isolation procedure are noteworthy advantages of this method. The recyclability of the ionic liquid makes this protocol environmentally benign  

We investigate the structure and electronic properties of phosphatidylcholine (PC) under different degrees of hydration at the single-molecule and monolayer type level by linear scaling ab initio calculations. Upon hydration, the phospholipid undergoes drastic long-range conformational rearrangements which lead to a sickle-like ground-state shape. The structural unit of the tilted gel-phase PC appears to be a water-bridged PC dimer. We find that hydration dramatically alters the surface potential, dipole and quadrupole moments of the lipids and consequently guides the interactions of the lipids with other molecules and the communication between cells