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    Corrigendum: “optimum rice husk ash content and bacterial concentration in self-compacting concrete” (construction and building materials (2019) 222 (796–813), (S0950061819316198), (10.1016/j.conbuildmat.2019.06.190))

    , Article Construction and Building Materials ; Volume 283 , 2021 ; 09500618 (ISSN) Ameri, F ; Shoaei, P ; Bahrami, N ; Vaezi, M. S ; Ozbakkaloglu, T ; Sharif University of Technology
    Elsevier Ltd  2021
    Abstract
    The authors regret that there were minor errors in the labels of the XRD patterns of cement and micro-silica presented in Figs. 1 and 2, which have been corrected in the figures included here. In addition, due to concerns over the reliability of the XRD pattern of pumice shown in Fig. 9, as caused by a low signal count, the authors have re-analyzed the pumice and the updated XRD pattern has been included here. It is worth noting that these changes do not affect any of the conclusions. The authors would like to apologise for any inconvenience caused. © 2021  

    Mechanical Model in Cell and Nucleus Deformation

    , M.Sc. Thesis Sharif University of Technology Heydari, Tiam (Author) ; Ejtehadi, Mohammad Reza (Supervisor)
    Abstract
    Now a days, the ability of measuring the mechanical properties of the living cells in in experiments has been increased. Experiments shows that the stem cells could alter their faith in different mechanical situations, but an integrated model about this phenomenon in literature has not been introduced yet. In this research thesis s minimal cell model (MMC) is developed to capture the behavior of the cells on substrates with varying mechanical properties and morphologies, MMC consists of large scale models for outer membrane of the cell and nuclear envelope, cytoplasmic area, chromatin fibers and Extra cellular matrix. Each component of the MMC will be placed in an integrated software to... 

    Mechanical behavior Analysis of Cancerous Cells in the Micropipette Aspiration Using Finite Element Simulations

    , M.Sc. Thesis Sharif University of Technology Ghoytasi, Ebrahim (Author) ; Naghdabadi, Reza (Supervisor) ; Bavi, Omid (Co-Supervisor)
    Abstract
    Diseases such as cancer lead to extensive conversion in the biological structure of cells. These conversions can overshadow cell function. The dynamics of a cell directly depends on how it interacts with other cells and the extracellular environment. Most of these interactions are associated with the occurrence of mechanical phenomena and are due to forces that the cell has experienced. Cell mechanics manifests itself in the Mechanotransduction, the ability of a cell to sense and respond to external forces. Cancer alters the mechanical properties of the components of the cytoskeleton. Understanding the biomechanical behavior of cells and cytoskeleton can play an important role in early... 

    Numerical Modeling of Endothelial Cell’s Groups Migration in a Microfluidics Device

    , M.Sc. Thesis Sharif University of Technology Abeddoust, Mohammad (Author) ; Shamloo, Amir (Supervisor)
    Abstract
    Cell migration plays a key role in many biological processes including metastasis, wound healing, inflammatory response, body immune response and formation of new blood vessels. The migration of cells in response to the gradient of concentration gradient is regarded as chemotaxis. In the present study, the group chemotaxis of endothelial cells is simulated in response to gradient concentration of biochemical species using a developed cell migration model. At the first step, the numerical simulation of fluid flow and concentration transport of biochemical species is performed using a developed FVM code. At the second part, a model is developed to mimic the group migration of endothelial... 

    Investigation and Characterization of Circulating tumor Cells (CTCs) by the Microfluidics Systems

    , M.Sc. Thesis Sharif University of Technology Yari, Alireza (Author) ; Vossoughi, Manoucher (Supervisor) ; Alemzadeh, Iran (Supervisor) ; Shamloo, Amir (Supervisor)
    Abstract
    Cancer is the second leading cause of death among humans as one of the major human concerns. More than 500,000 people die of cancer each year in the United States alone. Cancer mortality is mainly due to cancer metastasis. Metastasis is the escape of cancer cells from a primary tumor, the circulation of cells in the circulatory system (CTSs), the penetration of/from vessel wall, and the formation of a secondary tumor. It is still not clear how the cells survive in the circulatory system, along with the mechanical pressures and stresses that exist in the body's capillary channals. In this study, a microcirculation model for circulating cells with barriers was designed and constructed by the... 

    Microfluidic systems for stem cell-based neural tissue engineering

    , Article Lab on a Chip - Miniaturisation for Chemistry and Biology ; Volume 16, Issue 14 , 2016 , Pages 2551-2571 ; 14730197 (ISSN) Karimi, M ; Bahrami, S ; Mirshekari, H ; Moosavi Basri, S. M ; Bakhshian Nik, A ; Aref, A. R ; Akbari, M ; Hamblin, M. R ; Sharif University of Technology
    Royal Society of Chemistry  2016
    Abstract
    Neural tissue engineering aims at developing novel approaches for the treatment of diseases of the nervous system, by providing a permissive environment for the growth and differentiation of neural cells. Three-dimensional (3D) cell culture systems provide a closer biomimetic environment, and promote better cell differentiation and improved cell function, than could be achieved by conventional two-dimensional (2D) culture systems. With the recent advances in the discovery and introduction of different types of stem cells for tissue engineering, microfluidic platforms have provided an improved microenvironment for the 3D-culture of stem cells. Microfluidic systems can provide more precise... 

    Toward multiscale modeling of wave propagation in arteries

    , Article Journal of Mechanics in Medicine and Biology ; Volume 16, Issue 3 , 2016 ; 02195194 (ISSN) Raustin, R ; Mohammadi, H ; Sharif University of Technology
    World Scientific Publishing Co. Pte Ltd 
    Abstract
    In this study, we apply a novel numerical technique for modeling the propagation of mechanical wave in the human arteries using the multiscale method. We define a particle region characterized by molecular dynamics (MD) method which is surrounded by a continuous region characterized by a finite element (FE) method. The interface between the two models are defined so as to minimize spurious reflections at the interface. This is a preliminary work for the modeling of the mechanical stability of atherosclerosis plaques using multiscale method. The model offered has extensive application in cell mechanics  

    A portable culture chamber for studying the effects of hydrostatic pressure on cellular monolayers

    , Article Proceedings of the Institution of Mechanical Engineers, Part C: Journal of Mechanical Engineering Science ; 2018 ; 09544062 (ISSN) Kiyoumarsioskouei, A ; Saidi, M ; Mosadegh, B ; Firoozabadi, B ; Sharif University of Technology
    SAGE Publications Ltd  2018
    Abstract
    Hydrostatic pressure is one of the most fundamental and common mechanical stimuli in the body, playing a critical role in the homeostasis of all organ systems. Kidney function is affected by high blood pressure, namely hypertension, by the increased pressure acting on the glomerular capillary walls. This general effect of hypertension is diagnosed as a chronic disease, but underlying mechanistic causes are still not well understood. This paper reports a portable and adaptive device for studying the effects of hydrostatic pressure on a monolayer of cells. The fabricated device fits within a conventional incubation system and microscope. The effects of various pressures and durations were... 

    A portable culture chamber for studying the effects of hydrostatic pressure on cellular monolayers

    , Article Proceedings of the Institution of Mechanical Engineers, Part C: Journal of Mechanical Engineering Science ; Volume 233, Issue 3 , 2019 , Pages 807-816 ; 09544062 (ISSN) Kiyoumarsioskouei, A ; Saidi, M. S ; Mosadegh, B ; Firoozabadi, B ; Sharif University of Technology
    SAGE Publications Ltd  2019
    Abstract
    Hydrostatic pressure is one of the most fundamental and common mechanical stimuli in the body, playing a critical role in the homeostasis of all organ systems. Kidney function is affected by high blood pressure, namely hypertension, by the increased pressure acting on the glomerular capillary walls. This general effect of hypertension is diagnosed as a chronic disease, but underlying mechanistic causes are still not well understood. This paper reports a portable and adaptive device for studying the effects of hydrostatic pressure on a monolayer of cells. The fabricated device fits within a conventional incubation system and microscope. The effects of various pressures and durations were... 

    A mechanical model for morphological response of endothelial cells under combined wall shear stress and cyclic stretch loadings

    , Article Biomechanics and Modeling in Mechanobiology ; Volume 15, Issue 5 , 2016 , Pages 1229-1243 ; 16177959 (ISSN) Pakravan, H. A ; Saidi, M. S ; Firoozabadi, B ; Sharif University of Technology
    Springer Verlag 
    Abstract
    The shape and morphology of endothelial cells (ECs) lining the blood vessels are a good indicator for atheroprone and atheroprotected sites. ECs of blood vessels experience both wall shear stress (WSS) and cyclic stretch (CS). These mechanical stimuli influence the shape and morphology of ECs. A few models have been proposed for predicting the morphology of ECs under WSS or CS. In the present study, a mathematical cell population model is developed to simulate the morphology of ECs under combined WSS and CS conditions. The model considers the cytoskeletal filaments, cell–cell interactions, and cell–extracellular matrix interactions. In addition, the reorientation and polymerization of... 

    PLGA/TiO2 nanocomposite scaffolds for biomedical applications: Fabrication, photocatalytic, and antibacterial properties

    , Article BioImpacts ; Volume 11, Issue 1 , 2021 , Pages 45-52 ; 22285652 (ISSN) Pelaseyed, S. S ; Madaah Hosseini, H. R ; Nokhbedehghan, Z ; Samadikuchaksaraei, A ; Sharif University of Technology
    Tabriz University of Medical Sciences  2021
    Abstract
    Introduction: Porous 3D scaffolds synthesized using biocompatible and biodegradable materials could provide suitable microenvironment and mechanical support for optimal cell growth and function. The effect of the scaffold porosity on the mechanical properties, as well as the TiO2 nanoparticles addition on the bioactivity, antimicrobial, photocatalytic, and cytotoxicity properties of scaffolds were investigated. Methods: In the present study, porous scaffolds consisting poly (lactide-co-glycolide) (PLGA) containing TiO2 nanoparticles were fabricated via air-liquid foaming technique, which is a novel method and has more advantages due to not using additives for nucleation compared to former... 

    Fabrication of porous gelatin-chitosan microcarriers and modeling of process parameters via the RSM method

    , Article International Journal of Biological Macromolecules ; Volume 88 , 2016 , Pages 288-295 ; 01418130 (ISSN) Karimian, S. A. M ; Mashayekhan, S ; Baniasadi, H ; Sharif University of Technology
    Elsevier B.V 
    Abstract
    Porous gelatin-chitosan microcarriers (MCs) with the size of 350 ± 50 μm were fabricated with blends of different gelatin/chitosan (G/C) weight ratio using an electrospraying technique. Response surface methodology (RSM) was used to study the quantitative influence of process parameters, including blend ratio, voltage, and syringe pump flow rate, on MCs diameter and density. In the following, MCs of the same diameter and different G/C weight ratio (1, 2, and 3) were fabricated and their porosity and biocompatibility were investigated via SEM images and MTT assay, respectively. The results showed that mesenchymal stem cells (MSCs) could attach, proliferate, and spread on fabricated porous MCs... 

    3D Bioprinting of oxygenated cell-laden gelatin methacryloyl constructs

    , Article Advanced Healthcare Materials ; Volume 9, Issue 15 , 2020 Erdem, A ; Darabi, M. A ; Nasiri, R ; Sangabathuni, S ; Ertas, Y. N ; Alem, H ; Hosseini, V ; Shamloo, A ; Nasr, A. S ; Ahadian, S ; Dokmeci, M. R ; Khademhosseini, A ; Ashammakhi, N ; Sharif University of Technology
    Wiley-VCH Verlag  2020
    Abstract
    Cell survival during the early stages of transplantation and before new blood vessels formation is a major challenge in translational applications of 3D bioprinted tissues. Supplementing oxygen (O2) to transplanted cells via an O2 generating source such as calcium peroxide (CPO) is an attractive approach to ensure cell viability. Calcium peroxide also produces calcium hydroxide that reduces the viscosity of bioinks, which is a limiting factor for bioprinting. Therefore, adapting this solution into 3D bioprinting is of significant importance. In this study, a gelatin methacryloyl (GelMA) bioink that is optimized in terms of pH and viscosity is developed. The improved rheological properties...