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    An experimental and theoretical study on the structure and photoactivity of XFe2O4 (X = Mn, Fe, Ni, Co, and Zn) structures1

    , Article Russian Journal of Physical Chemistry A ; Volume, 88, Issue 13 , December , 2014 , pp. 2451-2461 ; 1531-863X Padervand, M ; Vossoughi, M ; Yousefi, H ; Salari, H ; Gholami, M. R. (Mohammad Reza) ; Sharif University of Technology
    Abstract
    XFe2O4 magnetic nanoparticles (X = Mn, Fe, Co, Ni, and Zn) were prepared by using two methods: coprecipitation and hydrothermal. The synthesized nanoparticles were compared according to the separation in an external magnetic field and finally, the hydrothermal method was specified as a better synthesis method. The magnetic nanoparticles were characterized by physico-chemical analysis methods such as Vibrating Sample Magnetometer (VSM), X-ray diffraction (XRD), Fourier Transform Infrared spectroscopy (FTIR), nitrogen adsorption-adsorption isotherm and Transmission Electron Microscopy (TEM). Magnetic properties of synthesized nanoparticles were studied by ab-initio theoretical methods to... 

    Conformational study of a strained tolanophane by dynamic 1H NMR spectroscopy and computational methods

    , Article Monatshefte fur Chemie ; Volume 139, Issue 10 , 2008 , Pages 1185-1189 ; 00269247 (ISSN) Darabi, H. R ; Azimzadeh Arani, M ; Tafazzoli, M ; Ghiasi, M ; Sharif University of Technology
    2008
    Abstract
    The existence of a short C-H⋯π (alkyl-alkyne) interaction in the structure of a strained and relatively rigid tolanophane is expected to hinder the rotation about the C-C sp3 single bond. Variable-temperature NMR experiments (performed in three solvents, CDCl3, THF-d8, and acetone-d6) and ab initio density functional calculations were carried out to investigate its dynamic nature. An energy barrier of 48.6 kJ/mol is determined at coalescence (210 K) with acetone-d6 which is in good agreement with calculation result (54 kJ/mol). © 2008 Springer-Verlag  

    Monte Carlo simulation of 2-ethoxyethanol in continuum configurational biased procedure: Conformational analysis and association in aqueous and non-aqueous media

    , Article Theoretical Chemistry Accounts ; Volume 107, Issue 3 , 2002 , Pages 162-172 ; 1432881X (ISSN) Tafazzoli, M ; Jalili, S ; Sharif University of Technology
    Springer New York  2002
    Abstract
    Monte Carlo simulations have been carried out for 2-ethoxyethanol (C 2E1) in isothermal-isobaric ensemble (NPT) at different temperatures and 1 atm pressure with a continuum configurational biased procedure in water and chloroform media. Hydrogen bond bridges were formed between adjacent oxygen atoms in C2E1 (CH 3CH2OCH2CH2OH) through water molecules. We also found that the stable conformers of C2E 1 in water and CHCl3 are different and the effect of temperature on solute-solvent interaction energies is considerable. The self-association of C2E1 in aqueous and nonaqueous media has been studied by statistical perturbation theory, and the relative free energy has been obtained at different... 

    Elastic Moduli Tensors, Ideal Strength, and Morphology of Stanene based on an Enhanced Continuum Model and First Principles

    , M.Sc. Thesis Sharif University of Technology Etehadieh koochak, Azadeh (Author) ; Mohammadi Shoja, Hossein (Supervisor)
    Abstract
    Nowadays, multifunctional two-dimensional (2D) nanostructured materials due to their important role in biomedical and nanotechnological developments have gained the attention of many engineers and scientists with a wide spectrum of disciplines. The present work aims to provide an accurate description of the tensile behavior (from the initial unloaded state through axial strain of about 0.25) of the planar as well as low-buckled stanene and to capture their ideal strength in armchair- and zigzag-directions. Stanene is 2D hexagonal lattice which belongs to D6 hcrystal class having a six-fold rotational symmetry. For an accurate description of anisotropic response of such hyperelastic materials... 

    Structure and Conformational Study of Drug Compounds using NMR and Ab-initio Calculations

    , Ph.D. Dissertation Sharif University of Technology Chashmniam, Saeed (Author) ; Tafazzoli, Mohsen (Supervisor)
    Abstract
    NMR spectroscopy as a powerful technique is often used to investigate on structural and conformational studies on proteins and drug compounds. In this work, conformations and structural properties of drug compounds and some nucleoside derivations have been studied using advanced NMR techniques including H-H COSY, HMQC, HMBC and NOESY and quantum based calculations.Experimental analysis on Valsartan show that there are two simultaneous conformers (M and m) with unequal population in M-m type solvents and two stable conformers (N and n) in the N-n type solvents. As the results show, different intramolecular hydrogen bond is the reason for stability af all available conformers. In the... 

    A Nanoscopic Approach to the Determination of the Elastic Constants of Cubic Crystals in first Strain Gradient Theory

    , M.Sc. Thesis Sharif University of Technology Moosavian, Hashem (Author) ; Mohammadi Shodja, Hossein (Supervisor)
    Abstract
    In many problems, the traditional elasticity cannot predict phenomenon such as nano-scale defects, surface effects, and stress concentration correctly. For example, analysis near the crack tip, dislocation and inhomogeneity shows inconsistent results because in this case values of stress go to infinity. Therefore for solving these kinds of problems, higher order continuum theories were introduced. The appearance of additional constants in the equations of motion can represent the atomic nature of materials. Furthermore, they can be utilized for determining properties of materials vibration with high frequency, granular materials, and polymers.First strain gradient theory introduced by... 

    Kinetics and Mechanism of 4,4-Dicyano 5-Ethyl 1,5-Heptadiene Reaction in Gas and Solution Phase; Theoretical Approach

    , M.Sc. Thesis Sharif University of Technology Omidi, Masoume (Author) ; Gholami, Mohammad Reza (Supervisor) ; Sajjadi, Ali Akbar (Co-Advisor)
    Abstract
    Kinetics and mechanism of 4,4-dicyano-5-ethyl-1,5-heptadiene rearrangement reaction, a pericyclic type reaction, were studied with ab initio calculations in gas and solution phases. This reaction is one of the cope rearrangement in which secondary kinetic isotope effect is observed. Theoretical study on these reactions showed that probability of radicalic mechanism is inconsiderable and reaction proceeds through out a concerted mechanism with cyclic transition state. Isotope effect was studied by replacement of H1, H2 and H4,H5 with deuterium. The isotope effect data confirmed the concerted mechanism. Solvent effects on this reaction were studied by CPCM model. Solvation energies at... 

    Nucleoside Structure using Ab-Initio Computational Methods

    , M.Sc. Thesis Sharif University of Technology Chashmniam, Saeed (Author) ; Tafazzoli, Mohsen (Supervisor)
    Abstract
    The spin – spin coupling constants have been calculated by the Gaussian 2009 program in order to study the nucleosides conformation. To study the effect of solvent, the calculations were performed in four solvent including water, DMSO, chloroform and Carbon tetrachloride.
    Also, the comparison is done on two computing methods including DFT (B3LYP) and HF using 6-311++g** and 6-311g basis set.One bonding (1JC-H), two bonding (2JN-H, 2JC-H) and three bonging coupling constants (3JC-H) have been calculated for unpaired adenosine, thymidine and uridine molecules.Formation of intra-molecular hydrogen bond and electron pair repulsion, respectively, makes the compounds stable and unstable.... 

    Mechanics and morphology of single-walled carbon nanotubes: From graphene to the elastica

    , Article Philosophical Magazine ; Volume 93, Issue 17 , 2013 , Pages 2057-2088 ; 14786435 (ISSN) Delfani, M. R ; Shodja, H. M ; Ojaghnezhad, F ; Sharif University of Technology
    2013
    Abstract
    The elastica is referred to the shape of the curve into which the centreline of a flexible lamina is bent. Hence, single-walled carbon nanotubes (SWCNTs) are treated as the elastica obtained from bending of graphene. The corresponding large deformation accompanies both the material and geometrical non-linearities. The morphology of the free-standing SWCNTs such as the natural angle of twist, bond lengths, tube radius and wall thickness are determined. Moreover, it is shown that the induced self-equilibriated strain field has a remarkable impact on the mechanical behaviour of the nanotube. Utilization of an appropriate non-linear continuum constitutive relation for graphene leads to exact... 

    Methane molecule over the defected and rippled graphene sheet

    , Article Solid State Communications ; Volume 152, Issue 15 , August , 2012 , Pages 1493-1496 ; 00381098 (ISSN) Shayeganfar, F ; Neek Amal, M ; Sharif University of Technology
    Elsevier  2012
    Abstract
    Adsorption of a methane molecule (CH 4) onto a defected and rippled graphene sheet is studied using ab initio and molecular mechanics calculations. The optimal adsorption position and orientation of this molecule on the graphene surface (motivated by the recent realization of graphene sensors to detect individual gas molecules) is determined and the adsorption energies are calculated. In light of the density of states, we used the SIESTA code. It is found that (i) classical force field yields adsorption energy comparable with experimental result and ab initio calculation; (ii) the periodic nature of the van der Waals potential energy stored between methane and perfect sheet is altered due to... 

    Theoretical Study of Solvent and Substituent Effects on Kinetic and Mechanism of Organic Reactions and Theoretical Study of Enzyme Reactions

    , Ph.D. Dissertation Sharif University of Technology Irani, Mehdi (Author) ; Gholami, Mohammad Reza (Supervisor)
    Abstract
    Computational chemistry is used to study solvent and substituent effects on kinetics and mechanism of some organic reactions. It also is used to study enzyme reactions and enzyme structures. Organic reactions were studied by ab initio quantum mechanics and Monte Carlo simulations. The enzyme studies were done by QM/MM and MD methods in Lund University. The studied organic reactions are 1) Reactions of hydroxylamine and aminoxide anion with methyl iodide. 2) Rearrangement of allyl p-tolyl ether. 3) Reactions of 1,4-Benzoquinone with Cyclopentadiene and Cyclohexadiene derivatives and reaction of cyclopentadiene and vinyl acetate. In the enzyme studies the catalytic reaction of Glyoxalase... 

    Ab-initio Calculations of Electronic and Phonon Structures of Ba1-xKxFe2As2 (x = 0,0.5,1) Superconductor

    , M.Sc. Thesis Sharif University of Technology Sandoghchi, Mohammad (Author) ; Khosroabadi, Hossien (Supervisor) ; Akhavan Farshchi, Mohammad (Supervisor)
    Abstract
    After discovery of superconductivity in 1911 people try to find superconductors with higher Tc. High Tc superconductivity in cuprates and iron based superconductors was discovered in 1986 and 2008 respectively. However, there is not any unit theory for high Tc superconductivity in cuprates or iron based superconductors. Study of electronic and phonon structures of high Tc superconductor compounds can lead to find theory of high Tc superconductivity.
    In this dissertation electronic structure of Ba1-xKxFe2As2, which belongs to class of 122 of iron based superconductor, under potassium doping x=0,0.5,1 has been studied. To this end ab-initio method and Density functional theory have been... 

    Theoretical Investigation of Ab-initio MD Approach to Increase the Efficiency and Accuracy of VCD Spectrum Calculation

    , M.Sc. Thesis Sharif University of Technology Hadi, Hossein (Author) ; Jamshidi, Zahra (Supervisor)
    Abstract
    Understanding of the Molecules is the main purpose of the chemistry. Ab-initio molecular dynamics (AIMD) as a branch of the computational chemistry, tries to give us a deep comprehension of the molecule, and its chemical, physical and optical activities. This comprehension, relies on the accuracy of quantum mechanics, in addition to the speed of the classical mechanics. The mixing of the quantum mechanics and the classical mechanics could simulate activities of the atoms in the time-domain, provided the mixing is done with precaution. This, in turn, helps us to forecast the response of a molecule in different situations, and also translating the macroscopic phenomena in a nanoscopic... 

    Hydration strongly affects the molecular and electronic structure of membrane phospholipids

    , Article Journal of Chemical Physics ; Volume 136, Issue 11 , 2012 ; 00219606 (ISSN) Mashaghi, A ; Partovi Azar, P ; Jadidi, T ; Nafari, N ; Maass, P ; Tabar, M. R. R ; Bonn, M ; Bakker, H. J ; Sharif University of Technology
    Abstract
    We investigate the structure and electronic properties of phosphatidylcholine (PC) under different degrees of hydration at the single-molecule and monolayer type level by linear scaling ab initio calculations. Upon hydration, the phospholipid undergoes drastic long-range conformational rearrangements which lead to a sickle-like ground-state shape. The structural unit of the tilted gel-phase PC appears to be a water-bridged PC dimer. We find that hydration dramatically alters the surface potential, dipole and quadrupole moments of the lipids and consequently guides the interactions of the lipids with other molecules and the communication between cells  

    Investigation of quantum conductance in semiconductor single-wall carbon nanotubes: Effect of strain and impurity

    , Article Journal of Applied Physics ; Volume 110, Issue 6 , 2011 ; 00218979 (ISSN) Rabiee Golgir, H ; Faez, R ; Pazoki, M ; Karamitaheri, H ; Sarvari, R ; Sharif University of Technology
    2011
    Abstract
    In this paper the effect of strain and impurity on the quantum conductance of semiconducting carbon nanotubes (CNTs) have been studied by ab-initio calculations. The effect of strain and impurity on the CNT conducting behavior and physical characteristics, like density of states (DOS), band structure, and atomic local density of state (LDOS), is considered and discussed separately and simultaneously. Our results show that the quantum conductance of semiconductor CNTs is increased by compression strain, elongation strain, and replacing nitrogen and boron doping in its structure. The amount of increasing in the conductance depends on the type of strain and impurity. Conductance of CNT can be... 

    Ab-Initio calculations of the CO adsorption and dissociation on substitutional Fe-Cu surface alloys relevant to Fischer-Tropsch Synthesis: Bcc-(Cu)Fe(100) and fcc-(Fe)Cu(100)

    , Article Surface and Interface Analysis ; Volume 45, Issue 7 , 2013 , Pages 1081-1087 ; 01422421 (ISSN) Elahifard, M ; Fazeli, E ; Joshani, A ; Gholami, M ; Sharif University of Technology
    Abstract
    Direct CO dissociation is seen the main path of the first step in the Fischer-Tropsch Synthesis (FTS) on the reactive iron surfaces. Cu/Fe alloy film is addressed with various applications over face-centered-cubic (fcc)-Cu and body-centered-cubic (bcc)-Fe in the FTS, i.e. preventing iron carbide formation (through direct CO dissociation) by moderating the surface reactivity and facilitating the reduction of iron surfaces, respectively. In this study by density functional theory, the stable configurations of CO molecule on various Cu/Fe alloys over fcc-Cu(100) and bcc-Fe(100) surfaces with different CO coverage (25% and 50%) have been evaluated. Our results showed that the ensemble effect... 

    Surfactant binary systems: Ab initio calculations, preferential solvation, and investigation of solvatochromic parameters

    , Article Journal of Chemical and Engineering Data ; Volume 61, Issue 1 , 2016 , Pages 255-263 ; 00219568 (ISSN) Kohantorabi, M ; Salari, H ; Fakhraee, M ; Gholami, M.R ; Sharif University of Technology
    American Chemical Society 
    Abstract
    Solvatochromic UV-vis shifts of three probes 4-nitroaniline, 4-nitroanisol, and Reichardt's dye in binary mixtures of polyethylene glycol p-(1,1,3,3-tetramethylbutyl)-phenyl ether (Triton X-100 or TX-100) with methanol, ethanol, 1-propanol, and water have been investigated at 298 K. Structural and intermolecular interactions of solvatochromic probes were determined in these systems. Solvatochromic parameters, including normalized polarity (ETN), dipolarity-polarizability (π∗), hydrogen-bond donor (α), and hydrogen-bond acceptor (β) abilities, were measured at a wide range of mole fraction (0 ≤ X ≤ 1) with 0.1 increment. Interestingly, a similar behavior of ETN and α is observed in... 

    Short Term and Long Term Analysis of Radiation Damage in Carbon Based Steels with Emphasis on Reactor Pressure Vessel

    , Ph.D. Dissertation Sharif University of Technology Zamzamian, Mehrdad (Author) ; Samadfam, Mohammad (Supervisor) ; Feghhi, Amir Hossein (Supervisor)
    Abstract
    Steels as structural materials of pressure vessels of nuclear reactors, in addition to high temperatures and pressures, are exposed to ionizing radiation such as neutrons. The primary effects of damage caused by exposing these solids to radiation are the displacement of atoms from their equilibrium positions and the formation of point defects and damage clusters caused by damage accumulation due to displacement cascades produced by transmitting the energy of the incident particle to an atom by interactions such as elastic and inelastic scatterings neutrons with the nucleus. These microstructural changes cause large structural defects such as swelling, cracking, cracking, creep, reducing... 

    Electron correlation in Sr(Ca)RuO 3 by GWA and LSDA+U

    , Article European Physical Journal B ; Volume 84, Issue 2 , November , 2011 , Pages 203-217 ; 14346028 (ISSN) Hadipour, H ; Akhavan, M ; Sharif University of Technology
    2011
    Abstract
    We have investigated the role of electron-electron correlation in SrRuO 3 and CaRuO 3 bulk structures. At first, the DOS of SrRuO 3 and CaRuO 3 is obtained using the full potential linearized augmented plane wave method by LSDA. We have then calculated the electronic structure, dielectric function, self-energy, and spectral function for the bulk SrRuO 3 and CaRuO 3 by GWA. The shifting of the Ru t 2g orbitals, broadening in Ru valance bands, and also the enhancement in exchange splitting shows better agreement between the GWA many-body correction with the bulk experimental results. But, in spite of the many-body correction, the GWA results is not completely consistent with the PES... 

    Tunable bandgap opening in the proposed structure of silicon-doped graphene

    , Article Micro and Nano Letters ; Volume 6, Issue 8 , 2011 , Pages 582-585 ; 17500443 (ISSN) Azadeh, M. S. S ; Kokabi, A ; Hosseini, M ; Fardmanesh, M ; Sharif University of Technology
    2011
    Abstract
    A specific structure of doped graphene with substituted silicon impurity is introduced and ab initio density-functional approach is applied for the energy band structure calculation of the proposed structure. Using the band structure calculation for different silicon sites in the host graphene, the effect of silicon concentration and unit cell geometry on the bandgap of the proposed structure is also investigated. Chemically, silicon-doped graphene results in an energy gap as large as 2eV according to density-functional theory calculations. As the authors will show, in contrast to previous bandgap engineering methods, such structure has significant advantages including wide gap tuning...