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    An efficient simulated annealing approach to the traveling tournament problem [electronic resource]

    , Article American Journal of Operations Research ; Vol.2 No.3, September 2012, 391-398 Nourollahi, S (Sevnaz) ; Eshghi, Kourosh ; Shokri Razaghi, Hooshmand ; Sharif University of Technology
    Abstract
    Scheduling sports leagues has drawn significant attention to itself in recent years, as it involves considerable revenue as well as challenging combinatorial optimization problems. A particular class of these problems is the Traveling Tournament Problem (TTP) which focuses on minimizing the total traveling distance for teams. In this paper, an efficient simulated annealing approach is presented for TTP which applies two simultaneous and disparate models for the problem in order to search the solutions space more effectively. Also, a computationally efficient modified greedy scheme is proposed for constructing a favorable initial solution for the simulated annealing algorithm. Our... 

    Transportation and Settling Distribution of Microparticles in Low-Reynolds-Number Poiseuille Flow in Microchannel

    , Article Journal of Dispersion Science and Technology ; Volume 37, Issue 4 , 2016 , Pages 582-594 ; 01932691 (ISSN) Razaghi, R ; Saidi, M. H ; Sharif University of Technology
    Taylor and Francis Inc  2016
    Abstract
    In this article, velocity field and settling distribution of microparticles in a dilute suspension in low-Reynolds-number Poiseuille flow in a microchannel is experimentally investigated using microscopic image analysis. An effective technique is applied to manipulate single-particle tracking in order to determine the controlling parameters on transportation and settling of microparticles in microchannels. The results show that the velocities of dispersed phase are affected by the hydrodynamic properties, and this velocity deviation can be significant when the hydrodynamic coupling between particles and channel walls is considerable. Increasing the Reynolds number would result in decrease in... 

    Experimental investigation of drag and lift forces on microparticles in low reynolds number poiseuille flow in microchannel

    , Article Journal of Dispersion Science and Technology ; Volume 37, Issue 12 , 2016 , Pages 1767-1777 ; 01932691 (ISSN) Razaghi, R ; Saidi, M. H ; Sharif University of Technology
    Taylor and Francis Inc  2016
    Abstract
    In this paper, the hydrodynamic drag and lift forces on microparticles in a dilute suspension in low Reynolds number Poiseuille flow in a microchannel is experimentally investigated using microscopic image analysis. An effective technique is applied to manipulate single-particle tracking in order to determine the velocity field and hydrodynamic forces on microparticles with diameter-to-channel height ratio of 0.1 (Formula presented.) in microchannels. The results show that there is a distance near the walls of the channel in which the hydrodynamic coupling between the particles and channel walls is considerable. Also, the magnitude of drag force that is imposed on the particles with... 

    A novel time-frequency receiver for unknown fast fading channels

    , Article 2004 IEEE Wireless Communications and Networking Conference, WCNC 2004, Atlanta, GA, 21 March 2004 through 25 March 2004 ; Volume 3 , 2004 , Pages 1572-1577 ; 0780383443 (ISBN) Razaghi, P ; Khalaj, B. H ; Sharif University of Technology
    Institute of Electrical and Electronics Engineers Inc  2004
    Abstract
    A new approach for data detection in fast fading channels is proposed. By using a combination of Rake receiver and sequential detection for fast fading channels, it is shown that system performance can be improved without prior knowledge of the channel. As will be shown in this paper, by combining spread spectrum signaling and sequential detection it is possible to exploit the time-frequency diversity of fast fading channels in a novel way. It is shown by simulation that combination of sequential detection and Rake receiver can effectively improve system performance, compared with equal gain combining  

    Linear decoupled and quasi-decoupled space-time codes

    , Article IEEE Transactions on Communications ; Volume 55, Issue 1 , 2007 , Pages 54-59 ; 00906778 (ISSN) Razaghi, P ; Khalaj, B. H ; Shamsi, M ; Sharif University of Technology
    2007
    Abstract
    Space-time transmit diversity results in coupling of transmitted symbols across different antennas, which increases the complexity of maximum-likelihood decoding. Symbol coupling can be completely or partially avoided if the space-time code (STC) satisfies specific decoupling conditions; examples of such codes are orthogonal space-time block codes and quasi-orthogonal codes. In this letter, we study decoupling conditions for a linear full-diversity STC. Quasi-decoupled codes are proposed as a partially decoupled full-diversity STC of any rate for any number of transmit antennas with minimum decoding delay. By optimizing the coding gain of quasi-decoupled codes, it is shown that... 

    Laboratory-Scale Investigation of Rock Mechanical Behavior under Reservoir Condition

    , M.Sc. Thesis Sharif University of Technology Razaghi, Negar (Author) ; Shad, Saeed (Supervisor) ; Pak, Ali (Co-Supervisor)
    Abstract
    Geomechanics has an immense impact on petroleum engineering and applies to the most aspects of petroleum extraction, from exploration and drilling to production and even reservoir abandonment. Studying the mechanical behavior of rocks in hydrocarbon reservoirs and overburden layers will lead to better characterization of mechanical state of the environment. Therefore, a solid understanding of rock mechanical behavior can play a crucial role in reducing operational issues of oil and gas extraction in different phases and prevent extra cost and time consumption. To illustrate, studies of wellbore stability and integrity, casing burst and collapse, drilling optimization, sand production,... 

    Coupled hydro-mechanical analysis of underground gas storage at Sarajeh field, Qom formation, Iran

    , Article Journal of Natural Gas Science and Engineering ; Volume 92 , 2021 ; 18755100 (ISSN) Bakhtiari, M ; Shad, S ; Zivar, D ; Razaghi, N ; Sharif University of Technology
    Elsevier B.V  2021
    Abstract
    Production or injection of fluids from/in an underground storage site causes variations of pore pressure and stress states. These fluctuations significantly affect implications for hydraulic fracturing, wellbore integrity, top surface subsidence and heave, fault-reactivation, and stability of reservoir and caprock. Therefore, in order to keep optimal conditions during the process of gas injection and production, it is of paramount importance to have accurate estimates of the pore pressure. In this investigation, coupled fluid flow and geomechanical simulations, as well as rock mechanical tests, are performed on the Sarajeh field, Iran to investigate the geomechanical behavior of the Sarajeh... 

    CytoGTA: a cytoscape plugin for identifying discriminative subnetwork markers using a game theoretic approach

    , Article PLoS ONE ; Volume 12, Issue 10 , 2017 ; 19326203 (ISSN) Farahmand, S ; Foroughmand Araabi, M. H ; Goliaei, S ; Razaghi Moghadam, Z ; Sharif University of Technology
    2017
    Abstract
    In recent years, analyzing genome-wide expression profiles to find genetic markers has received much attention as a challenging field of research aiming at unveiling biological mechanisms behind complex disorders. The identification of reliable and reproducible markers has lately been achieved by integrating genome-scale functional relationships and transcriptome datasets, and a number of algorithms have been developed to support this strategy. In this paper, we present a promising and easily applicable tool to accomplish this goal, namely CytoGTA, which is a Cytoscape plug-in that relies on an optimistic game theoretic approach (GTA) for identifying subnetwork markers. Given transcriptomic... 

    Network vulnerability analysis through vulnerability take-grant model (VTG)

    , Article 7th International Conference on Information and Communications Security, ICICS 2005, Beijing, 10 December 2005 through 13 December 2005 ; Volume 3783 LNCS , 2005 , Pages 256-268 ; 03029743 (ISSN); 3540309349 (ISBN); 9783540309345 (ISBN) Shahriari, H. R ; Sadoddin, R ; Jalili, R ; Zakeri, R ; Omidian, A. R ; Sharif University of Technology
    2005
    Abstract
    Modeling and analysis of information system vulnerabilities helps us to predict possible attacks to networks using the network configuration and vulnerabilities information. As a fact, exploiting most of vulnerabilities result in access rights alteration. In this paper, we propose a new vulnerability analysis method based on the Take-Grant protection model. We extend the initial Take-Grant model to address the notion of vulnerabilities and introduce the vulnerabilities rewriting rules to specify how the protection state of the system can be changed by exploiting vulnerabilities. Our analysis is based on a bounded polynomial algorithm, which generates the closure of the Take-Grant graph... 

    First passage time distribution of chaperone driven polymer translocation through a nanopore: Homopolymer and heteropolymer cases

    , Article Journal of Chemical Physics ; Volume 135, Issue 24 , 2011 ; 00219606 (ISSN) Abdolvahab, R. H ; Metzler, R ; Ejtehadi, M. R ; Sharif University of Technology
    2011
    Abstract
    Combining the advection-diffusion equation approach with Monte Carlo simulations we study chaperone driven polymer translocation of a stiff polymer through a nanopore. We demonstrate that the probability density function of first passage times across the pore depends solely on the Péclet number, a dimensionless parameter comparing drift strength and diffusivity. Moreover it is shown that the characteristic exponent in the power-law dependence of the translocation time on the chain length, a function of the chaperone-polymer binding energy, the chaperone concentration, and the chain length, is also effectively determined by the Péclet number. We investigate the effect of the chaperone size on... 

    Sequence dependence of the binding energy in chaperone-driven polymer translocation through a nanopore

    , Article Physical Review E - Statistical, Nonlinear, and Soft Matter Physics ; Volume 83, Issue 1 , January , 2011 ; 15393755 (ISSN) Abdolvahab, R. H ; Ejtehadi, M. R ; Metzler, R ; Sharif University of Technology
    2011
    Abstract
    We study the translocation of stiff polymers through a nanopore, driven by the chemical-potential gradient exerted by binding proteins (chaperones) on the trans side of the pore. Bound chaperones prevent backsliding through the pore and, therefore, partially rectify the polymer passage. We show that the sequence of chain monomers with different binding affinity for the chaperones significantly affects the translocation dynamics. In particular, we investigate the effect of the nearest-neighbor adjacency probability of the two monomer types. Depending on the magnitude of the involved binding energies, the translocation speed may either increase or decrease with the adjacency probability. We... 

    Reply: Abedpour, asgari, and tabar

    , Article Physical Review Letters ; Volume 106, Issue 20 , 2011 ; 00319007 (ISSN) Abedpour, N ; Asgari, R ; Tabar, M. R. R ; Sharif University of Technology
    2011

    Irreversibility in response to forces acting on graphene sheets

    , Article Physical Review Letters ; Volume 104, Issue 19 , May , 2010 ; 00319007 (ISSN) Abedpour, N ; Asgari, R ; Tabar, M. R. R ; Sharif University of Technology
    2010
    Abstract
    The amount of rippling in graphene sheets is related to the interactions with the substrate or with the suspending structure. Here, we report on an irreversibility in the response to forces that act on suspended graphene sheets. This may explain why one always observes a ripple structure on suspended graphene. We show that a compression-relaxation mechanism produces static ripples on graphene sheets and determine a peculiar temperature Tc, such that for T

    Analysis of design goals of cryptography algorithms based on different components

    , Article Indonesian Journal of Electrical Engineering and Computer Science ; Volume 23, Issue 1 , 2021 , Pages 540-548 ; 25024752 (ISSN) Molk, A.M.N.G ; Aref, M. R ; Khorshiddoust, R. R ; Sharif University of Technology
    Institute of Advanced Engineering and Science  2021
    Abstract
    Cryptography algorithms are a fundamental part of a cryptographic system that is designed and implemented to increase information security. They are the center of attention of experts in the information technology domains. Although the cryptography algorithms are implemented to attain the goals such as confidentially, integrity, and authenticity of designing, but other matters that must be noticed by designers include speed, resource consumption, reliability, flexibility, usage type, and so on. For the useful allocation of hardware, software, and human resources, it is important to identify the role of each of the factors influencing the design of cryptographic algorithms to invest in the... 

    Conservation of statistical results under the reduction of pair-contact interactions to solvation interactions

    , Article Physical Review E - Statistical, Nonlinear, and Soft Matter Physics ; Volume 72, Issue 6 , 2005 ; 15393755 (ISSN) Radja, N.H ; Farzami, R. R ; Ejtehadi, M. R ; Sharif University of Technology
    2005
    Abstract
    We show that the hydrophobicity of sequences is the leading term in Miyazawa-Jernigan interactions. Being the source of additive (solvation) terms in pair-contact interactions, they were used to reduce the energy parameters while resulting in a clear vector manipulation of energy. The reduced (additive) potential performs considerably successful in predicting the statistical properties of arbitrary structures. The evaluated designabilities of the structures by both models are highly correlated. Suggesting geometrically nondegenerate vectors (structures) as proteinlike structures, the additive model is a powerful tool for protein design. Moreover, a crossing point in the log-linear diagram of... 

    Multifunctional hyperelastic structured surface for tunable and switchable transparency

    , Article Applied Sciences (Switzerland) ; Volume 11, Issue 5 , 2021 , Pages 1-11 ; 20763417 (ISSN) Mahabadi, R. K ; Goudarzi, T ; Fleury, R ; Naghdabadi, R ; Sharif University of Technology
    MDPI AG  2021
    Abstract
    We leverage the crucial hyperelastic properties of a multifunctional structured surface to optimize the reconfigurability of the electromagnetic transmission under large nonlinear mechanical deformations. This multiphysics, multifunctional, hyperelastic structured surface (HSS) offers two simultaneous intriguing functionalities; tunability and switchability. It is made of copper reso-nators and a Polydimethylsiloxane (PDMS) substrate, which is one of the most favorable deformable substrates due to its hyperelastic behavior. The proposed HSS is fabricated via an original cost-effective technique and the multiphysics functionalities are captured in both experimental tests and numerical... 

    MaxHiC: A robust background correction model to identify biologically relevant chromatin interactions in Hi-C and capture Hi-C experiments

    , Article PLoS Computational Biology ; Volume 18, Issue 6 , 2022 ; 1553734X (ISSN) Alinejad Rokny, H ; Modegh, R. G ; Rabiee, H. R ; Sarbandi, E. R ; Rezaie, N ; Tam, K. T ; Forrest, A. R. R ; Sharif University of Technology
    Public Library of Science  2022
    Abstract
    Hi-C is a genome-wide chromosome conformation capture technology that detects interactions between pairs of genomic regions and exploits higher order chromatin structures. Conceptually Hi-C data counts interaction frequencies between every position in the genome and every other position. Biologically functional interactions are expected to occur more frequently than transient background and artefactual interactions. To identify biologically relevant interactions, several background models that take biases such as distance, GC content and mappability into account have been proposed. Here we introduce MaxHiC, a background correction tool that deals with these complex biases and robustly... 

    SER of M-PSK modulation in incremental-selective decode-and-forward cooperative communications over Rayleigh fading channels

    , Article International Conference on Advanced Communication Technology, ICACT, 13 February 2011 through 16 February 2011 ; February , 2011 , Pages 432-437 ; 17389445 (ISSN) ; 9788955191554 (ISBN) Renani, R. A ; Saadat, R ; Aref, M. R ; Mirjalily, G ; Sharif University of Technology
    2011
    Abstract
    In this paper we consider a cooperative communication systems over Rayleigh fading channels. The system utilizes a combination of incremental and selective decode-and-forward (ISDF) relaying protocols. The symbol error rate (SER) of M-PSK modulation for the ISDF protocol is derived. Using an approximation of the SER expression, the optimal power allocation is investigated. In order to reduce the complexity of the receiver, we used a modified version of the ISDF protocol which does not use the storage or retransmission of the first phase signal. We also derived optimal power allocation coefficient for modified ISDF. It has been noted that for the optimal power allocation in the ISDF protocol,... 

    Power allocation for incremental-selective decode-and-forward cooperative communications over Rician fading channels

    , Article International Conference on Advanced Communication Technology, ICACT, 13 February 2011 through 16 February 2011 ; February , 2011 , Pages 730-734 ; 17389445 (ISSN) ; 9788955191554 (ISBN) Renani, R. A ; Saadat, R ; Aref, M. R ; Mirjalily, G ; Sharif University of Technology
    2011
    Abstract
    In this paper we consider a relaying communication system over Rician fading channels. In this system we assume simple Incremental-Selective Decode-and-Forward (ISDF) protocol, which is jointly combining incremental and selective DF relaying protocols. In this protocol, storage or retransmission of the first phase signal are not allowed. We analyze the symbol error rate (SER) performance of the recommended protocol with M-PSK modulation. We evaluate the performance of the protocol in the frequency nonselective slow Rician fading channels. Using the approximation of the SER expression, the optimal power allocation is investigated. Our results show that at least 50% of total power must be used... 

    Efficient and practical protocol for silylation of hydroxyl groups using reusable lithium perchlorate dispread in silica gel under neutral condition [electronic resource]

    , Article Journal of Organometallic Chemistry ; 2006, Volume 691, Issue 5, Pages 817–820 Azizi, N. (Najmodin) ; Yousefi, R ; Saidi, M. R ; Sharif University of Technology
    Abstract
    A very efficient and mild procedure for the trimethylsilylation of a wide variety of alcohols, including primary, allylic, benzylic, secondary, hindered secondary, tertiary, and phenols with hexamethyldisilazane on the surface of silica gel dispersed with LiClO4 in room temperature at few minutes in excellent yields under neutral conditions is reported. This procedure also allows the excellent selectivity under LP-SiO2 system for silylation of alcohols in the presence of amine and phenolic hydroxy groups