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    Phase shift calibration based on Fresnel diffraction from phase plates

    , Article Journal of Optics (United Kingdom) ; Volume 14, Issue 12 , 2012 ; 20408978 (ISSN) Aalipour, R ; Aminjafari, M ; Sharif University of Technology
    2012
    Abstract
    When a transparent plane-parallel plate is illuminated at a boundary region by a parallel monochromatic beam of light, Fresnel diffraction occurs because of the abrupt change in phase imposed by the finite change in refractive index at the plate boundary. The intensity of the diffraction fringes varies periodically with changes in the optical path difference of the light passing through the plate edge. The optical path difference depends on the incident angle of the light, the refractive index of the plate and surrounding medium, and the wavelength of the light. Plotting the intensity of the diffraction fringes versus optical path difference provides a general phase shift method for phase... 

    On the cayley graph of a commutative ring with respect to its zero-divisors

    , Article Communications in Algebra ; Volume 44, Issue 4 , 2016 , Pages 1443-1459 ; 00927872 (ISSN) Aalipour, G ; Akbari, S ; Sharif University of Technology
    Taylor and Francis Inc  2016
    Abstract
    Let R be a commutative ring with unity and R+ and Z*(R) be the additive group and the set of all nonzero zero-divisors of R, respectively. We denote by ℂ𝔸𝕐(R) the Cayley graph Cay(R+, Z*(R)). In this article, we study ℂ𝔸𝕐(R). Among other results, it is shown that for every zero-dimensional nonlocal ring R, ℂ𝔸𝕐(R) is a connected graph of diameter 2. Moreover, for a finite ring R, we obtain the vertex connectivity and the edge connectivity of ℂ𝔸𝕐(R). As a result, ℂ𝔸𝕐(R) gives an algebraic construction for vertex transitive graphs of maximum connectivity. In addition, we characterize all zero-dimensional semilocal... 

    Some properties of a cayley graph of a commutative ring

    , Article Communications in Algebra ; Vol. 42, issue. 4 , Dec , 2014 , pp. 1582-1593 ; ISSN: 00927872 Aalipour, G ; Akbari, S ; Sharif University of Technology
    2014
    Abstract
    Let R be a commutative ring with unity and R+, U(R), and Z*(R) be the additive group, the set of unit elements, and the set of all nonzero zero-divisors of R, respectively. We denote by ℂAY(R) and GR, the Cayley graph Cay(R+, Z*(R)) and the unitary Cayley graph Cay(R+, U(R)), respectively. For an Artinian ring R, Akhtar et al. (2009) studied GR. In this article, we study ℂAY(R) and determine the clique number, chromatic number, edge chromatic number, domination number, and the girth of ℂAY(R). We also characterize all rings R whose ℂAY(R) is planar. Moreover, we determine all finite rings R whose ℂAY(R) is strongly regular. We prove that ℂAY(R) is strongly regular if and only if it is edge... 

    On the coloring of the annihilating-ideal graph of a commutative ring

    , Article Discrete Mathematics ; Volume 312, Issue 17 , 2012 , Pages 2620-2626 ; 0012365X (ISSN) Aalipour, G ; Akbari, S ; Nikandish, R ; Nikmehr, M. J ; Shaveisi, F ; Sharif University of Technology
    Elsevier  2012
    Abstract
    Suppose that R is a commutative ring with identity. Let A(R) be the set of all ideals of R with non-zero annihilators. The annihilating-ideal graph of R is defined as the graph AG(R) with the vertex set A( R)*=A(R)(0) and two distinct vertices I and J are adjacent if and only if IJ=(0). In Behboodi and Rakeei (2011) [8], it was conjectured that for a reduced ring R with more than two minimal prime ideals, girth(AG(R))=3. Here, we prove that for every (not necessarily reduced) ring R, ω(AG(R))<|Min(R)|, which shows that the conjecture is true. Also in this paper, we present some results on the clique number and the chromatic number of the annihilating-ideal graph of a commutative ring. Among... 

    On the structure of the power graph and the enhanced power graph of a group

    , Article Electronic Journal of Combinatorics ; Volume 24, Issue 3 , 2017 ; 10778926 (ISSN) Aalipour, G ; Akbari, S ; Cameron, P. J ; Nikandish, R ; Shaveisi, F ; Sharif University of Technology
    2017
    Abstract
    Let G be a group. The power graph of G is a graph with the vertex set G, having an edge between two elements whenever one is a power of the other. We characterize nilpotent groups whose power graphs have finite independence number. For a bounded exponent group, we prove its power graph is a perfect graph and we determine its clique/chromatic number. Furthermore, it is proved that for every group G, the clique number of the power graph of G is at most countably infinite. We also measure how close the power graph is to the commuting graph by introducing a new graph which lies in between. We call this new graph the enhanced power graph. For an arbitrary pair of these three graphs we... 

    Minimal prime ideals and cycles in annihilating-ideal graphs

    , Article Rocky Mountain Journal of Mathematics ; Volume 43, Issue 5 , 2013 , Pages 1415-1425 ; 00357596 (ISSN) Aalipour, G ; Akbari, S ; Nikandish, R ; Nikmehr, M. J ; Shaveisi, F ; Sharif University of Technology
    2013
    Abstract
    Let R be a commutative ring with identity, and let A(R) be the set of ideals with non-zero annihilator. The annihilating-ideal graph of R is defined as the graph AG(R) with the vertex set A(R)* = A(R) {0}, and two distinct vertices I and J are adjacent if and only if IJ = 0. In this paper, we study some connections between the graph theoretic properties of this graph and some algebraic properties of a commutative ring. We prove that if AG(R) is a tree, then either AG(R) is a star graph or a path of order 4 and, in the latter case, R = F × S, where F is a field and S is a ring with a unique non-trivial ideal. Moreover, we prove that if R has at least three minimal prime ideals, then AG(R) is... 

    Laplacian spectral characterization of two families of trees

    , Article Linear and Multilinear Algebra ; Volume 62, Issue 7 , July , 2014 , Pages 965-977 ; ISSN: 03081087 Aalipour, G ; Akbari, S ; Shajari, N ; Sharif University of Technology
    2014
    Abstract
    It is well known that all starlike trees, i.e. trees with exactly one vertex of degree at least three, are determined by their Laplacian spectrum. A double starlike tree is a tree with exactly two vertices of degree at least three. In 2009, the following question was posed: Are all the double starlike trees determined by their Laplacian spectra? In this direction, it was proved that one special double starlike tree Hn(p,p) is determined by its Laplacian spectrum, where Hn(p,q) is a tree obtained by joining p pendant vertices to an end vertex of a path of order and then joining pendant vertices to another end of the path. Also, the banana tree Bn,k is a tree obtained by joining a vertex to... 

    On D-equivalence class of complete bipartite graphs

    , Article Ars Combinatoria ; Vol. 117, issue , Oct , 2014 , p. 275-288 ; 03817032 Aalipour-Hafshejani, G ; Akbari, S ; Ebrahimi, Z ; Sharif University of Technology
    2014
    Abstract
    Let G be a simple graph of order n. We mean by dominating set, a set S C V(G) such that every vertex of G is either in S or adjacent to a vertex in S. The domination polynomial of G is the polynomial Σni=1 (G,i)xi where d((g,i) is the number of dominating sets of G of size i. Two graphs G and H are said to be V-equivalent, written G H, if D((G, x) = D(H, x). The D-equivalence class of G is [G] = { H H G }. Recently, the determination of D-equivalence class of a given graph, has been of interest. In this paper, it is shown that for n ≥ 3, [Kn, n] has size two. We conjecture that the complete bipartite graph Km,n for n - m ≥ 2, is uniquely determined by its domination polynomial  

    Cayley Graphs and Annihilating-Ideal Graph of a Ring

    , Ph.D. Dissertation Sharif University of Technology Aalipour Hafshejani, Ghodratollah (Author) ; Akbari, Saeed (Supervisor)
    Abstract
    In the recent years, the role of combinatorics and graph theory have grown in the progress of computer sciences. For instance, the circulant graphs have applications in design of interconnection networks and the graphs with integer eigenvalues are applied in modelling quantum spin networks supporting the perfect state transfer. The circulant graphs with integer eigenvalues also found applications in molecular graph energy. In 2006, it was shown that an n-vertex circulant graph G has integer eigenvalues if G=Cay(Zn; T ) or G= Cay(Zn; T)∪Cay(Zn;U(Zn)), where T Z(Zn). The Cayley graph Cay(Zn;U(Zn)) is known as the unitary Cayley graph. Fuchs defined the unitary Cayely graph of a commutative... 

    A modified method for barium titanate nanoparticles synthesis

    , Article Materials Research Bulletin ; Volume 46, Issue 12 , 2011 , Pages 2291-2295 ; 00255408 (ISSN) Ashiri, R ; Nemati, A ; Sasani Ghamsari, M ; Sanjabi, S ; Aalipour, M ; Sharif University of Technology
    2011
    Abstract
    In this research, a modified, cost effective sol-gel procedure applied to synthesize BaTiO3 nanoparticles. XRD and electron microscopy (SEM and TEM) applied for microstructural characterization of powders. The obtained results showed that the type of precursors, their ratio and the hydrolysis conditions had a great effect on time, temperature and therefore the costs of the synthesis process. By selection, utilization of optimized precursor's type, hydrolysis conditions, fine cubic BaTiO3 nanoparticles were synthesized at low temperature and in short time span (1 h calcination at 800 °C). The proposed procedure seems to be more preferable for mass production. The result indicated that the... 

    Network vulnerability analysis through vulnerability take-grant model (VTG)

    , Article 7th International Conference on Information and Communications Security, ICICS 2005, Beijing, 10 December 2005 through 13 December 2005 ; Volume 3783 LNCS , 2005 , Pages 256-268 ; 03029743 (ISSN); 3540309349 (ISBN); 9783540309345 (ISBN) Shahriari, H. R ; Sadoddin, R ; Jalili, R ; Zakeri, R ; Omidian, A. R ; Sharif University of Technology
    2005
    Abstract
    Modeling and analysis of information system vulnerabilities helps us to predict possible attacks to networks using the network configuration and vulnerabilities information. As a fact, exploiting most of vulnerabilities result in access rights alteration. In this paper, we propose a new vulnerability analysis method based on the Take-Grant protection model. We extend the initial Take-Grant model to address the notion of vulnerabilities and introduce the vulnerabilities rewriting rules to specify how the protection state of the system can be changed by exploiting vulnerabilities. Our analysis is based on a bounded polynomial algorithm, which generates the closure of the Take-Grant graph... 

    First passage time distribution of chaperone driven polymer translocation through a nanopore: Homopolymer and heteropolymer cases

    , Article Journal of Chemical Physics ; Volume 135, Issue 24 , 2011 ; 00219606 (ISSN) Abdolvahab, R. H ; Metzler, R ; Ejtehadi, M. R ; Sharif University of Technology
    2011
    Abstract
    Combining the advection-diffusion equation approach with Monte Carlo simulations we study chaperone driven polymer translocation of a stiff polymer through a nanopore. We demonstrate that the probability density function of first passage times across the pore depends solely on the Péclet number, a dimensionless parameter comparing drift strength and diffusivity. Moreover it is shown that the characteristic exponent in the power-law dependence of the translocation time on the chain length, a function of the chaperone-polymer binding energy, the chaperone concentration, and the chain length, is also effectively determined by the Péclet number. We investigate the effect of the chaperone size on... 

    Sequence dependence of the binding energy in chaperone-driven polymer translocation through a nanopore

    , Article Physical Review E - Statistical, Nonlinear, and Soft Matter Physics ; Volume 83, Issue 1 , January , 2011 ; 15393755 (ISSN) Abdolvahab, R. H ; Ejtehadi, M. R ; Metzler, R ; Sharif University of Technology
    2011
    Abstract
    We study the translocation of stiff polymers through a nanopore, driven by the chemical-potential gradient exerted by binding proteins (chaperones) on the trans side of the pore. Bound chaperones prevent backsliding through the pore and, therefore, partially rectify the polymer passage. We show that the sequence of chain monomers with different binding affinity for the chaperones significantly affects the translocation dynamics. In particular, we investigate the effect of the nearest-neighbor adjacency probability of the two monomer types. Depending on the magnitude of the involved binding energies, the translocation speed may either increase or decrease with the adjacency probability. We... 

    Reply: Abedpour, asgari, and tabar

    , Article Physical Review Letters ; Volume 106, Issue 20 , 2011 ; 00319007 (ISSN) Abedpour, N ; Asgari, R ; Tabar, M. R. R ; Sharif University of Technology
    2011

    Irreversibility in response to forces acting on graphene sheets

    , Article Physical Review Letters ; Volume 104, Issue 19 , May , 2010 ; 00319007 (ISSN) Abedpour, N ; Asgari, R ; Tabar, M. R. R ; Sharif University of Technology
    2010
    Abstract
    The amount of rippling in graphene sheets is related to the interactions with the substrate or with the suspending structure. Here, we report on an irreversibility in the response to forces that act on suspended graphene sheets. This may explain why one always observes a ripple structure on suspended graphene. We show that a compression-relaxation mechanism produces static ripples on graphene sheets and determine a peculiar temperature Tc, such that for T

    Analysis of design goals of cryptography algorithms based on different components

    , Article Indonesian Journal of Electrical Engineering and Computer Science ; Volume 23, Issue 1 , 2021 , Pages 540-548 ; 25024752 (ISSN) Molk, A.M.N.G ; Aref, M. R ; Khorshiddoust, R. R ; Sharif University of Technology
    Institute of Advanced Engineering and Science  2021
    Abstract
    Cryptography algorithms are a fundamental part of a cryptographic system that is designed and implemented to increase information security. They are the center of attention of experts in the information technology domains. Although the cryptography algorithms are implemented to attain the goals such as confidentially, integrity, and authenticity of designing, but other matters that must be noticed by designers include speed, resource consumption, reliability, flexibility, usage type, and so on. For the useful allocation of hardware, software, and human resources, it is important to identify the role of each of the factors influencing the design of cryptographic algorithms to invest in the... 

    Conservation of statistical results under the reduction of pair-contact interactions to solvation interactions

    , Article Physical Review E - Statistical, Nonlinear, and Soft Matter Physics ; Volume 72, Issue 6 , 2005 ; 15393755 (ISSN) Radja, N.H ; Farzami, R. R ; Ejtehadi, M. R ; Sharif University of Technology
    2005
    Abstract
    We show that the hydrophobicity of sequences is the leading term in Miyazawa-Jernigan interactions. Being the source of additive (solvation) terms in pair-contact interactions, they were used to reduce the energy parameters while resulting in a clear vector manipulation of energy. The reduced (additive) potential performs considerably successful in predicting the statistical properties of arbitrary structures. The evaluated designabilities of the structures by both models are highly correlated. Suggesting geometrically nondegenerate vectors (structures) as proteinlike structures, the additive model is a powerful tool for protein design. Moreover, a crossing point in the log-linear diagram of... 

    Multifunctional hyperelastic structured surface for tunable and switchable transparency

    , Article Applied Sciences (Switzerland) ; Volume 11, Issue 5 , 2021 , Pages 1-11 ; 20763417 (ISSN) Mahabadi, R. K ; Goudarzi, T ; Fleury, R ; Naghdabadi, R ; Sharif University of Technology
    MDPI AG  2021
    Abstract
    We leverage the crucial hyperelastic properties of a multifunctional structured surface to optimize the reconfigurability of the electromagnetic transmission under large nonlinear mechanical deformations. This multiphysics, multifunctional, hyperelastic structured surface (HSS) offers two simultaneous intriguing functionalities; tunability and switchability. It is made of copper reso-nators and a Polydimethylsiloxane (PDMS) substrate, which is one of the most favorable deformable substrates due to its hyperelastic behavior. The proposed HSS is fabricated via an original cost-effective technique and the multiphysics functionalities are captured in both experimental tests and numerical... 

    MaxHiC: A robust background correction model to identify biologically relevant chromatin interactions in Hi-C and capture Hi-C experiments

    , Article PLoS Computational Biology ; Volume 18, Issue 6 , 2022 ; 1553734X (ISSN) Alinejad Rokny, H ; Modegh, R. G ; Rabiee, H. R ; Sarbandi, E. R ; Rezaie, N ; Tam, K. T ; Forrest, A. R. R ; Sharif University of Technology
    Public Library of Science  2022
    Abstract
    Hi-C is a genome-wide chromosome conformation capture technology that detects interactions between pairs of genomic regions and exploits higher order chromatin structures. Conceptually Hi-C data counts interaction frequencies between every position in the genome and every other position. Biologically functional interactions are expected to occur more frequently than transient background and artefactual interactions. To identify biologically relevant interactions, several background models that take biases such as distance, GC content and mappability into account have been proposed. Here we introduce MaxHiC, a background correction tool that deals with these complex biases and robustly... 

    SER of M-PSK modulation in incremental-selective decode-and-forward cooperative communications over Rayleigh fading channels

    , Article International Conference on Advanced Communication Technology, ICACT, 13 February 2011 through 16 February 2011 ; February , 2011 , Pages 432-437 ; 17389445 (ISSN) ; 9788955191554 (ISBN) Renani, R. A ; Saadat, R ; Aref, M. R ; Mirjalily, G ; Sharif University of Technology
    2011
    Abstract
    In this paper we consider a cooperative communication systems over Rayleigh fading channels. The system utilizes a combination of incremental and selective decode-and-forward (ISDF) relaying protocols. The symbol error rate (SER) of M-PSK modulation for the ISDF protocol is derived. Using an approximation of the SER expression, the optimal power allocation is investigated. In order to reduce the complexity of the receiver, we used a modified version of the ISDF protocol which does not use the storage or retransmission of the first phase signal. We also derived optimal power allocation coefficient for modified ISDF. It has been noted that for the optimal power allocation in the ISDF protocol,...